Job Description P0A6J5 Confidence 99.87% Date Thu Jan 5 11:03:18 GMT 2012 Rank 24 Aligned Residues 393 % Identity 15% Template c2ivdA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen Resolution 2.3 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		M	R	V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	.	S	A	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R	L
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		M	N	V	A	V	V	G	G	G	I	S	G	L	A	V	A	H	H	L	R	S	R	G	T	D	A	V	L	L	E	S	S	A	R	L	G	G	A	V	G	T	H	A	L	A	G	Y	L	V	E	Q	G	P	N	S	F	L	D	R	E	P	A	T	R	A	L	A	A	A	L	N	L	E	G	R	I	R	A	A	D
Template Known Secondary structure										B												T	T	T								S	S	S	S	S	B	T	T							T	T					S	S						T	T											T	T		G	G	G				S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	G	T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	R	T	E	Q	Q	Y	E	N	A	T	R	D	I	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		P	A	A	K	R	R	Y	V	Y	T	R	G	R	L	R	S	V	P	A	S	P	P	A	F	L	A	S	D	I	L	P	L	G	A	R	L	R	V	A	G	E	L	F	S	R	R	A	P	E	G	V	D	E	S	L	A	A	F	G	R	R	H	L	G	H	R	A	T	Q	V	L	L	D	A	V	Q	T	G	I	Y
Template Known Secondary structure		S	S									T	T								S						T		S	S	S										G	G	G	G						T	T				B									T								T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
																	156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	D	A	G	V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		A	G	D	V	E	Q	L	S	V	A	A	T	F	P	M	L	V	K	M	E	R	E	H	R	S	L	I	L	G	A	I	R	A	Q	K	A	Q	R	Q	A	G	T	A	P	K	L	S	G	A	L	S	T	F	D	G	G	.	.	.	.	.	.	L	Q	V	L	I	D	A	L	A	A	S	L	G	D	A	A	H	V
Template Known Secondary structure					T	T	T	B	B																S	S													T					S											T	T		.	.	.	.	.	.	T												G	G	G			S
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																					.																			.	.	.	.	.	.	.	.	.
Query SS confidence																					.																			.	.	.	.	.	.	.	.	.
Query Sequence		N	T	P	V	D	Q	L	L	C	D	G	E	Q	I	Y	G	V	K	C	.	G	D	E	V	I	K	A	D	A	Y	V	M	A	F	G	S	Y	S	.	.	.	.	.	.	.	.	.	T	A	M	L	K	G	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G	A	P	V	S
Query Conservation																					.																			.	.	.	.	.	.	.	.	.
Alig confidence																					.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	R	V	E	G	L	A	R	E	G	W	R	L	I	I	E	E	H	G	R	R	A	E	L	S	V	A	Q	V	V	L	A	A	P	A	H	A	T	A	K	L	L	R	P	L	D	D	A	L	A	A	L	V	A	G	I	A	Y	A	P	I	A	V	V	H	L	G	F	D	A	G	T	L	P	A	P	D	G	F
Template Known Secondary structure		S																		T	T								S						S										T	T	T										T			B												T	T	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		291	.	.						.	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.
Predicted Secondary structure					.	.	.	.	.									.	.	.	.	.	.	.	.	.									.	.																																							.	.
Query SS confidence					.	.	.	.	.									.	.	.	.	.	.	.	.	.									.	.																																							.	.
Query Sequence		T	I	L	.	.	.	.	.	D	E	T	Y	K	I	A	I	.	.	.	.	.	.	.	.	.	T	R	F	D	N	R	I	R	.	.	V	G	G	M	A	E	I	V	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R	D	L	Y	P	R	G	G	H	V	E	Q	.	.	A	T	F	W	T
Query Conservation					.	.	.	.	.									.	.	.	.	.	.	.	.	.									.	.																																							.	.
Alig confidence					.	.	.	.	.									.	.	.	.	.	.	.	.	.									.	.																																							.	.
Template Conservation
Template Sequence		G	F	L	V	P	A	E	E	Q	R	R	M	L	G	A	I	H	A	S	T	T	F	P	F	R	A	E	G	G	R	V	L	Y	S	C	M	V	G	G	A	R	Q	P	G	L	V	E	Q	D	E	D	A	L	A	A	L	A	R	E	E	L	K	A	L	A	G	V	T	A	R	P	S	F	T	R	V	F	R	W	P
Template Known Secondary structure							G	G	G			S												G	G	G	B	S	T	T											T	T		G	G	G	G	G	S																					S			S								S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		353	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.						370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.														.	.	.	.	.								.
Query SS confidence						.														.	.	.	.	.								.
Query Sequence		G	L	R	P	.	M	T	P	D	G	T	P	V	V	G	R	T	R	.	.	.	.	.	F	K	N	L	W	L	N	.	T	G	H	G	T	L	G	W	T	M	A	C	G	S	G	Q	L	L	S	D	L	L	S
Query Conservation						.														.	.	.	.	.								.
Alig confidence						.														.	.	.	.	.								.
Template Conservation
Template Sequence		L	G	I	P	Q	Y	N	L	G	H	L	E	R	V	A	A	I	D	A	A	L	Q	R	L	P	G	L	H	L	I	G	N	A	Y	K	G	V	G	L	N	D	C	I	R	N	A	A	Q	L	A	D	A	L	V
Template Known Secondary structure		S			B			B	T	T														T	S	T	T					S	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.