Job Description P0A6J5 Confidence 99.72% Date Thu Jan 5 11:03:18 GMT 2012 Rank 38 Aligned Residues 392 % Identity 15% Template c1sezA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial; PDBTitle: crystal structure of protoporphyrinogen ix oxidase Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	S	A	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R	L	D	G
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		R	V	A	V	I	G	A	G	V	S	G	L	A	A	A	Y	K	L	K	I	H	G	L	N	V	T	V	F	E	A	E	G	K	A	G	G	K	L	R	S	V	S	Q	D	G	L	I	W	D	E	G	A	N	.	T	X	T	E	S	E	G	D	V	T	F	L	I	D	S	L	G	L	R	E	K	Q	Q	F	P	L
Template Known Secondary structure									S												T	T	S								S	S	S	S	S		S	S							T	T					S	S			.		B				S										T	T		G	G	G					S
Template Predicted Secondary structure																																																							.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	R	T	E	Q	Q	Y	E	N	A	T	R	D	I	A	V	L	E	D	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	N	K	R	Y	I	A	R	N	G	T	P	V	L	L	P	S	N	P	I	D	L	I	K	S	N	F	L	S	T	G	S	K	L	Q	X	L	L	E	P	I	L	W	S	H	E	S	V	S	G	F	F	Q	R	H	F	G	K	E	V	V	D	Y	L	I	D	P	F	V	A	G	T	C	G	G	D	P	D	S
Template Known Secondary structure		S								S	S	S	S						S	S							S	S	S	S										T									B																T	T										S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.														.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F	N	T	P	V	D	Q	L	L
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.	.
Template Conservation																																																		.	.	.														.	.
Template Sequence		L	S	X	H	H	S	F	P	E	L	W	N	L	E	K	R	F	G	S	V	I	L	G	A	I	R	S	K	L	S	K	T	S	A	N	K	K	R	Q	R	G	S	F	S	F	L	G	G	.	.	.	X	Q	T	L	T	D	A	I	C	K	D	L	R	.	.	E	D	E	L	R	L	N	S	R	V	L	E	L	S
Template Known Secondary structure		S	B															T	S										T	T					S			S	T	T		S		B			T	T		.	.	.	T									T	T	S		.	.	T	T	T			T	T
Template Predicted Secondary structure																																																		.	.	.														.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.												.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.												.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	D	G	E	Q	I	Y	G	V	.	.	.	.	.	.	.	.	.	.	.	K	C	G	D	E	V	I	K	A	D	A	Y	V	M	A	F	G	S	Y	S	.	.	.	.	.	.	.	.	.	.	.	T	A	M	L	K	G	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G
Query Conservation											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	S	C	T	E	D	S	A	I	D	S	W	S	I	I	S	A	S	P	H	K	R	Q	S	E	E	E	S	F	D	A	V	I	X	T	A	P	L	C	D	V	K	S	X	K	I	A	K	R	G	N	P	F	L	L	N	F	I	P	E	V	D	Y	V	P	L	S	V	V	I	T	T	F	K	R	E	N	V	K	Y
Template Known Secondary structure					S	S	S	S	S	S								B		S	S	S	S		B						S						S							T	S				S	S	S	S	B				T	T	S																	G	G	G	B	S	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		A	P	V	S	T	I	L	D	E	T	Y	K	I	A	I	T	R	F	D	N	R	I	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	M	A	E	I	V	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R	D	L	Y	P	R	G	G	H	V	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		P	L	E	G	F	G	V	L	V	P	S	K	E	Q	Q	H	G	L	K	T	L	G	T	L	F	S	S	X	X	F	P	D	R	A	P	N	N	V	Y	L	Y	T	T	F	V	G	G	S	R	N	R	E	L	A	K	A	S	R	T	E	L	K	E	I	V	T	S	D	L	K	Q	L	L	G	A	E	G	E	P	T
Template Known Secondary structure					S	S						G	G	G	G	G	G	T			S	S										G	G	G	S		T	T										S	T	T		G	G	G	T	T																				B		S			S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
				346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.						370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.	.	.	.									.
Query SS confidence		.	.																									.	.	.	.	.									.
Query Sequence		.	.	E	Q	A	T	F	W	T	G	L	R	P	M	T	P	D	G	T	P	V	V	G	R	T	R	.	.	.	.	.	F	K	N	L	W	L	N	T	.	G	H	G	T	L	G	W	T	M	A	C	G	S	G	Q	L	L	S	D	L	L	S
Query Conservation		.	.																									.	.	.	.	.									.
Alig confidence		.	.																									.	.	.	.	.									.
Template Conservation
Template Sequence		Y	V	N	H	L	Y	W	S	K	A	F	P	L	Y	G	H	N	Y	D	S	V	L	D	A	I	D	K	X	E	K	N	L	P	G	L	F	Y	A	G	N	H	R	G	G	L	S	V	G	K	A	L	S	S	G	C	N	A	A	D	L	V	I
Template Known Secondary structure		S															T	T															S	T	T						S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490