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Job DescriptionP18775
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank17Aligned Residues614
% Identity30%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90...... ...100.........110.........120.
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Query Sequence  HAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYD. . GLHQVRACLRGRSMRRRVYNPDRLK
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Template Sequence  DWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLK
Template Known Secondary structure  GGG

S


SSSS



TT


S



TTS


TT


TGGGGGTSTTB

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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   122.... ...130.........140.........150.........160.......
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Query Sequence  YPMKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNY
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Template Sequence  YPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFS
Template Known Secondary structure  S
TT
SST
TTTTSS


T
GGG
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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  GTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRM
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Template Sequence  PIPAMSMVSY. . . . . . . ASGARYLSLIGGTCLSFYD. WYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRT
Template Known Secondary structure 

GGGS.......T


TT.TTT
S
TS
S




TT
SS

SG
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   190......... 200.........210........ .220.........230.........240.........250.........260.
 
   248.250.........260.........270.........280.........290.........300.........310.. .......320.
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Query Sequence  SGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQ. . . . . . AFLDKYCVG
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Template Sequence  PDA. . . . HFFTEVRYKGTKTVAVTPDYAEI. AKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDM
Template Known Secondary structure  GG....GGGT

SS

.TSS


TT
TTTS

BST
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   262.. .....270.........280....... ..290.........300.........310.........320.........330......
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  PMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQ
Template Known Secondary structure  TB
SSS
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

S
SSBBTTT

B

B
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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   322.......330.........340.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YDEKTLPASAPKNGHYKAYILGEGPD. . . . . . . . . . . . . . . .
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Template Sequence  LSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSY
Template Known Secondary structure 


TTS
S

TT


TTS





SBTTS
TTB

SS

TTSBSST
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   417..420.........430.........440.........450.........460.........470.........480.........490......
 
   348.350.........360.........370..... ....380.........390.........400.........410.........420
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Query Sequence  . . GVAKTPEWASQITGVPADKIIKLAREIG. . . . . STKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGA
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Template Sequence  DDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAH
Template Known Secondary structure  TS

TT



TS

TSTTTT
TTSTT
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   497..500.........510.........520.........530.........540.........550.........560.........570......
 
   421......
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Query Sequence  REGSYSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLP
Template Known Secondary structure 
SS



SSTTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
TTSS
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   577..580.........590.........600.........610.........620.........630.........640.........650......
 
   428.430.........440.........450.........460.........470.........480.........490.........500
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Query Sequence  . . PFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEIL. . . . .
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Template Sequence  SAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEH
Template Known Secondary structure 
SS
BSS
TTSTTS
TSS
BGGG
TTSSSSS

S

TTTTT
SSTT
S

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   657..660.........670.........680.........690.........700.........710.........720.........730......
 
   501........510.........520.........530.........540.........550.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . QDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVI
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Template Sequence  GIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTS. . . DMHPFIHPLSAAV
Template Known Secondary structure 


S

TTTTT



SSS


SS





SSB

T
SB

TTSS


...SSSS

SS
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   737..740.........750.........760.........770.........780.........790.........800 .........810...
 
   558.560.........570.......
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Query Sequence  KPRFECKTIYEMTSELAKRL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYP
Template Known Secondary structure 

STT
B
TTTT




TTSGGG


SSS


GGGTSS


BTTTB
GG
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   814.....820.........830.........840.........850.........860.........870.........880.........890...
 
   578.580.........590.........600.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GVEQQFTEGRTQEEWMRHLYAQSREAIP. . . . . . . . .
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Template Conservation           
                       
                            
                 
Template Sequence  ATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAA
Template Known Secondary structure  GTB

TT
TT


B

SSTTTTSBB

S
TTTB
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   894.....900.........910.........920.........930.........940.........950.........960.........970...
 
   606...610.........620...... ...630......... 640.........650... ......
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Query Sequence  . . . . . . . . . . . . . . . . . . ELPTFEEFRKQGIFKKRDPQG. . . . . HHVAYKAFREDPQ. ANPLTTPSGKIEIY. . SQALAD
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Template Conservation       
     
                        
           
           

 
 


  

 

     
Template Sequence  LSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRD
Template Known Secondary structure  SS

GGGTGGGTT
B

S




TTSSS


SSS


TT



SSTTSSB




S
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   974.....980.........990.........1000.........1010.........1020.........1030.........1040.........1050...
 
   660.........670.........680....
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Query Sequence  IAATWELPEGDVIDPLPIYTPGFES
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Template Sequence  FGE. . . . . . . . . . . SLLVYRPPIDT
Template Known Secondary structure  TT
...........SS








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   1054.. ...1060.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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