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Job DescriptionP18775
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank9Aligned Residues693
% Identity28%Templatec2vpyE_
PDB info PDB header:oxidoreductaseChain: E: PDB Molecule:thiosulfate reductase; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4950.........60.........70.........80.........90.........100.........110.........120.......
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Query Sequence  AIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRV.
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Template Sequence  APWYAQEVKSVYQICEG. CFWRCGIVAHAVGNRVYKVEGYEANP. . . . . KSRGRLCPRGQGAPQTTYDPDRLKRPLIRVE
Template Known Secondary structure 

TTSS



S.STT

SSS

TTST.....TTTT


GGGGGG
TTS

S

T
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   30.........40...... ...50.........60.........70.. .......80.........90.........100...
 
   128.130.........140.........150.........160.........170.........180.........190........ .200....
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Query Sequence  . GARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYL. . NHYGDY
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Template Sequence  GSQRGEGKYRVATWEEALDHIAKKMLEIREKYGPEAIAFFGHG. . . . . . . . . . . TGDYWFVDFLPAAWGSPNAAKPSVSL
Template Known Secondary structure  T

SSS




GGGS
S...........TTTTTTT



T
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   104.....110.........120.........130.........140...... ...150.........160.........170..
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  SSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDE
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Template Sequence  CTAPREVASQWVFGRPIGGHEPIDWENARYIVLIGHHIGEDTHN. . . TQLQDFALALKNGAKVVVVDPRFSTA. AAKAHR
Template Known Secondary structure  TTSSS


SS

B
GGG
SS

BTTB

...TT

SB

TT.GGG
S
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   173......180.........190.........200.........210...... ...220.........230.........240.. ......
 
   285....290.........300.........310.........320.........330.........340.........350.........360....
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Query Sequence  WIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPA
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Template Sequence  WLPIKPGTDTALLLAWIHVLIYEDLYDKEYVAKYTVGFEELKAHVK. . . . . . . . . . . . . . . . . . . DFTPEWAEKHTEIPA
Template Known Secondary structure 


TT
TT
S

TTTTT...................T


S
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   249250.........260.........270.........280.........290.... .....300.........
 
   365....370......... 380.........390.........400.........410.........420......... 430..
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Query Sequence  DKIIKLAREIGSTKP. AFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPF. . . . . . . . . . . VRM
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Template Sequence  QVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALLYVNVLLGNYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCS
Template Known Secondary structure  TTTS



S


STT
TT
BTSTTSB


B











S




S

S
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   433......440.........450.........460.........470.........480.........490.........500.........510..
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Query Sequence  PTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVI
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Template Sequence  GPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMITGEPYPIKGLFAYGINLFHSIPN. . . . VPRTKEALKNLDLYVAI
Template Known Secondary structure  S
STTTTSSSSSS

TTTTSSSSSS

GGGTTS

SS



S

SS
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S
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   390.........400.........410.........420.........430.........440........ .450.........460.....
 
   513......520.........530.........540.........550.........560.........570.........580.........590..
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Query Sequence  DCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEW
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Template Sequence  DVLPQEHVMWADVILPEATYLERYDDFVLVAH. KTPFIQLRTPAHEPLFDTKPGWWIARELGLRLGLEQYFP. WKTIEEY
Template Known Secondary structure 
SS

TSS
B

GGG


B.SS


SS


SS
B
TTT
TTT

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   466...470.........480.........490....... ..500.........510.........520.........530...... ...540...
 
   593......600.........610.........620.........630.........640.........650.........660.........670..
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Query Sequence  MRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVI
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Template Sequence  LETRLQS. . . . . . LGLDLETMKGMGTLVQRGKP. . . . . WLEDWEKEGRLPFGTASGKIELYCQRFKEAG. . . . . . . . . . H
Template Known Secondary structure  TT......TT

S





.....STTT


SSSSSSS

SSSS..........
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   544.....550 .........560.........570 .........580.........590.........600. .
 
   673......680.........690.........700.........710......... 720.........730.........740.........
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Query Sequence  DPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAA. CRQEMWINPLDAQKRGIHNGDKVRIFNDRG. .
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Template Sequence  QPLPVFTPPEEP. . . . . . PEGFYRLLYGRSPVHTFARTQNNWVLMEMDPENEVWIHKEEAKRLGLKEGDYVMLVNQDGVK
Template Known Secondary structure 
S









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TT



B

TT

GGGGTT


S


TT

TT
TTS
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   603......610.... .....620.........630.........640.........650.........660.........670......
 
   750.........760.........770...... ...780.........790.... .....800.........810....
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Query Sequence  EVHIEAKVTPRMMPGVVALGEGAWYDP. . DAKRVDKGGCINVLTTQR. PSPLAKGNPSHTNLVQVEKV
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Template Sequence  EGPVRVKPTARIRKDCVYIVHGFGHKAPLMRLAHGRGASDNYLQTRYKLDPISGGAGLRVNFVRLEKA
Template Known Secondary structure 

SSB
TTB
B
BTT




TTSTTTTT
S






SSS


TT
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   677..680.........690.........700.........710.........720.........730.........740....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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