Job Description P18775 Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012 Rank 12 Aligned Residues 699 % Identity 22% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	D	E	K	V	I	W	S	A	C	T	V	N	C	G	S	R	C	P	L	R	M	H	V	V	D	G	E	I	K	Y	V	E	T	D	N	T	G	D	D	N	Y	D	G	L	H	Q	V	R	A	C	L	R	G	R	S	M	R	R	R	V	Y	N	P	D	R	L	K	Y	P	M	K	R	V	G	A	R	G	E
Query Conservation
Alig confidence															.																											.	.	.	.	.	.																														.	.
Template Conservation															.																											.	.	.	.	.	.																														.	.
Template Sequence		N	R	P	E	K	W	V	K	G	V	C	R	Y	.	C	G	T	G	C	G	V	L	V	G	V	K	D	G	K	A	V	A	I	Q	G	N	P	N	N	H	.	.	.	.	.	.	N	A	G	L	L	C	L	K	G	S	L	L	I	P	V	L	N	S	K	E	R	V	T	Q	P	L	V	R	R	.	.	H	K	G
Template Known Secondary structure		S	S		S								S	S	.		T	T										T	T									T	T	S	T	.	.	.	.	.	.	T	T	T								T						T		S		S			S					S	.	.	S	T	T
Template Predicted Secondary structure															.																											.	.	.	.	.	.																														.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		G	K	F	E	R	I	S	W	E	E	A	Y	D	I	I	A	T	N	M	Q	R	L	I	K	E	Y	G	N	E	S	I	Y	L	N	Y	G	T	G	T	L	G	G	T	M	T	R	S	W	P	P	G	N	T	L	V	A	R	L	M	N	C	C	G	G	Y	L	N	.	.	H	Y	G	D	Y	S	S	A	Q	I	A
Query Conservation																																																																					.	.
Alig confidence																																				.	.	.	.	.	.	.	.																										.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		G	K	L	E	P	V	S	W	D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	.	.	.	.	.	.	.	.	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V
Template Known Secondary structure																													G	G	G					.	.	.	.	.	.	.	.			T	T	S														T	T	T								G	G	G	G	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	L	N	Y	T	Y	G	G	W	A	D	G	N	S	P	S	D	I	E	N	S	K	L	V	V	L	F	G	N	N	P	G	E	T	R	M	S	G	G	G	V	T	Y	Y	L	E	Q	A	R	Q	K	S	N	A	R	M	I	I	I	D	P	R	Y	T	D	T	G	A	G	R	E	D	E	W	I	P	I	R	P
Query Conservation
Alig confidence																																										.	.																										.
Template Conservation																																										.	.																										.
Template Sequence		G	G	Y	V	T	S	F	G	K	D	E	P	M	G	T	Y	A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	.	.	R	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	D	P	R	R	T	N	T	.	S	R	I	A	D	M	H	V	A	F	R	P
Template Known Secondary structure									S	S		S		S	S		G	G	G	G	G	T		S						S							S					.	.											T	T								S	B			G	G	.	G	G	G		S							T
Template Predicted Secondary structure																																										.	.																										.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	D	A	A	L	V	N	G	L	A	Y	V	M	I	T	E	N	L	V	D	Q	A	F	L	D	K	Y	C	V	G	Y	D	E	K	T	L	P	A	S	A	P	K	N	G	H	Y	K	A	Y	I	L	G	E	G	P	D	G	V	A	K	T	P	E	W	A	S	Q	I	T	G	V	P	A	D	K	I	I	K	L
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	D	L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	L	D	N	P	R	F	W	Q	R	Y	V	N	F	M	D	A	E	G	K	P	S	D	.	.	.	.	.	.	.	.	.	.	F	E	G	Y	K	A	F	L	E	N	Y	R	P	E	K	V	A	E	I	C	R	V	P	V	E	Q	I	Y	G	A
Template Known Secondary structure		T																T	T		S														T	T	S		B			.	.	.	.	.	.	.	.	.	.									G	G	G										T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.											.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430													.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	E	I	G	S	T	K	P	A	F	I	S	Q	G	W	G	P	Q	R	H	A	N	G	E	I	A	T	R	A	I	S	M	L	A	I	L	T	G	N	V	G	I	N	G	G	N	S	G	A	R	E	G	S	Y	S	L	P	F	V	.	.	.	.	.	.	.	.	.	.	.	.	R	M	P	T	L	E	N	P
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	A	F	A	E	S	A	A	T	M	S	L	W	C	M	G	I	N	Q	R	V	Q	G	V	F	A	N	N	L	I	H	N	L	H	L	I	T	G	Q	I	C	R	P	G	A	T	S	F	S	L	T	G	Q	P	N	A	C	G	G	V	R	D	G	G	A	L	S	H	L	L	P	A	G	R	A	I	P	N	A
Template Known Secondary structure								S	S	S											S	S	T	T																T			S	B	T	T	B								S	T	T					T	T	T	T	T		S	T	T			T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.
Predicted Secondary structure																																																																							.										.
Query SS confidence																																																																							.										.
Query Sequence		I	Q	T	S	I	S	M	F	M	W	T	D	A	I	E	R	G	P	E	M	T	A	L	R	D	G	V	R	G	K	D	K	L	D	V	P	I	K	M	I	W	N	Y	A	G	N	C	L	I	N	Q	H	S	E	I	N	R	T	H	E	I	L	Q	D	D	K	K	C	E	.	L	I	V	V	I	D	C	H	M	.
Query Conservation																																																																							.										.
Alig confidence																																																							.	.	.	.													.										.
Template Conservation																																																							.	.	.	.
Template Sequence		K	H	R	A	E	M	E	K	L	W	G	L	P	E	G	R	I	A	P	E	P	G	Y	H	T	V	A	L	F	E	A	L	G	R	G	D	V	K	C	M	I	I	C	E	T	N	P	A	H	T	L	P	N	.	.	.	.	L	N	K	V	H	K	A	M	S	H	P	E	S	F	I	V	C	I	E	A	F	P	D
Template Known Secondary structure											T	T			T	T		S		S	S															T	S								S							S	S	S	.	.	.	.								T	T		T	T								S		T	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.					.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	S	A	K	Y	A	D	I	L	L	P	D	C	T	A	S	E	Q	M	D	F	A	L	D	A	S	C	G	N	M	S	Y	V	I	F	N	D	Q	V	I	K	P	R	F	E	C	K	T	I	Y	E	M	T	S	E	L	A	K	R	L	G	V	E	Q	Q	F	T	E	G	R	T	Q	E	E	W	M	R	H	L
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		A	V	T	L	E	Y	A	D	L	V	L	P	P	A	F	W	C	E	R	D	G	V	Y	G	C	G	E	R	.	.	.	.	R	Y	S	L	T	E	K	A	V	D	P	P	G	Q	C	R	P	T	V	N	T	L	V	E	F	A	R	R	A	G	V	D	P	Q	L	V	N	F	R	N	A	E	D	V	W	N	E	W
Template Known Secondary structure			G	G	G	G	S		S					B			G	G	G	S							T	T	S	.	.	.	.									S			S	T	T		B													T	T			T	T	T	T			S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.					.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
		597	.	.	600	.	.	.	.	.	.	.			.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		Y	A	Q	S	R	E	A	I	P	E	L	.	.	P	T	F	E	E	F	R	K	Q	G	I	F	K	K	R	D	P	Q	G	H	H	V	A	Y	K	A	F	R	E	D	P	Q	A	N	P	L	T	T	P	S	G	K	I	E	I	Y	S	Q	A	L	A	D	I	A	A	T	W	E	L	P	E	G	D	V	I	D	P
Query Conservation													.	.
Alig confidence													.	.																						.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Sequence		R	M	V	S	K	G	T	T	Y	D	F	W	G	M	T	R	E	R	L	R	K	E	S	G	L	I	W	P	C	P	S	E	D	H	.	.	.	.	.	.	.	.	.	.	P	G	T	S	L	R	Y	V	R	G	Q	D	P	C	V	P	A	D	H	P	D	R	F	F	F	Y	G	K	P	D	G	R	A	.	.	.
Template Known Secondary structure						T	T	S	T	T			T	T									S	S				S				S	T	T		.	.	.	.	.	.	.	.	.	.				S	S	T	T	B	T	T	T	S	T	T	S		T	T		S	S	S	B			T	T	S	T	T	S			.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.											.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710			.	.	.	.	.	.	.	.	.	720	.		.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure																																						.	.												.
Query SS confidence																																						.	.												.
Query Sequence		L	P	I	Y	T	P	G	F	E	S	Y	Q	D	P	L	N	K	Q	Y	P	L	Q	L	T	G	F	H	Y	K	S	R	V	H	S	T	Y	.	.	G	N	V	D	V	L	K	A	A	C	R	.	Q	E	M	W	I	N	P	L	D	A	Q	K	R	G	I	H	N	G	D	K	V	R	I	F	N	D	R	G	E	V
Query Conservation																																						.	.												.
Alig confidence		.																																				.	.												.
Template Conservation		.
Template Sequence		.	V	I	W	M	R	P	A	K	G	A	A	E	E	P	D	A	E	Y	P	L	Y	L	T	S	M	R	V	I	D	H	W	H	T	A	T	M	T	G	K	V	P	E	L	Q	K	A	N	P	I	A	F	V	E	I	N	E	E	D	A	A	R	T	G	I	K	H	G	D	S	V	I	V	E	T	R	R	D	A	M
Template Known Secondary structure		.											S	S				S	S	S										S	S			T	T		T	T	G	G	G		G	G	G	G	S	S		S	S														T			T	T								S	S
Template Predicted Secondary structure		.
Template SS confidence
			592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
		752	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	E	A	K	V	T	P	R	M	M	P	G	V	V	A	L	G	E	G	A	W	Y	D	P	D	A	K	R	V	D	K	G	G	C	I	N	V	L	T	T	Q	R	P	S	P	L	A	K	G	N	P	S	H	T	N	L	V	Q	V	E	K
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	P	A	R	V	S	D	V	C	R	P	G	L	I	A	V	P	F	F	D	P	.	.	.	.	.	.	.	.	.	.	K	K	L	V	N	K	L	F	L	D	A	T	D	P	V	S	R	E	P	E	Y	K	I	C	A	A	R	V	R	K
Template Known Secondary structure									S	S	B		T	T									T	.	.	.	.	.	.	.	.	.	.	T	S		G	G	G	T	S				B		T	T	T			B		T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.											.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.