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Job DescriptionP18775
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank10Aligned Residues725
% Identity24%Templatec2ivfA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60....... ..70.........80.........90...... ...100.........110.........120......
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Query Sequence  PTKSDEKVIWSACTVNC. . GSRCPLRMHVVDGEIKYVETDNTGDDNYD. . GLHQVRACLRGRSMRRRVYNPDRLKYPMKR
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Template Sequence  KEWKWDKVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKR
Template Known Secondary structure  TTS

S


S

SS




TT





SSTTS



S


TTGGGTTSTTB

S
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   70.........80.........90.........100.........110.........120.........130.........140.........
 
   127..130.........140.........150.........160.........170.........180.........190.........200......
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Query Sequence  VGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSS
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Template Sequence  VGKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAW. . . . . . . GAGFRMTYLMDGVSPDINV. DI
Template Known Secondary structure 
SSTTS



GGGG



STT
.......T
B
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   150.........160.........170.........180.........190.........200 .........210......... 220.
 
   207..210.........220.........230.........240.........250.........260.........270.........280......
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Query Sequence  AQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWI
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Template Sequence  GDTYMGAFHTFGKMHMGYSADNLLDAELIFMTCSNWSYTYPSSY. . . . HFLSEARYKGAEVVVIAPDFNPT. TPAADLHV
Template Known Secondary structure  T


S



B

GGGGGG
SS


TTT....T

SS

TT.GGG
S
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   222.......230.........240.........250.........260..... ....270.........280........ .290......
 
   287..290.........300.........310......... 320.........330........
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Query Sequence  PIRPGTDAALVNGLAYVMITENLVDQAFLDKYC. . . . . . . . . . . . . . . . . . . . . . . . . . . VGYDEKTLPASAPKNGHYK.
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Template Sequence  PVRVGSDAAFWLGLSQVMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKASRGTLKL
Template Known Secondary structure 


TT
TT
S
BSTTSTTT
SB
BS

TT
TTTT
SS



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   297..300.........310.........320.........330.........340.........350.........360.........370......
 
   339340.........350.........360.........370.........380.........390.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . AYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGE
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Template Sequence  DFMPALEGTFSARLKNGKTIQVRTVFEGLREHLKDYTPEKASAKCGVPVSLIRELGRKVAKKRTCSY. IGFSSAKSYHGD
Template Known Secondary structure  SS



S

TTS
GGGGS


S
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TTTTTBTT
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   377..380.........390.........400.........410.........420.........430.........440... ......450.....
 
   396...400.........410.........420.........430.........440.........450......
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Query Sequence  IATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGP. . . . . . . . . . . . . . . . . . .
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Template Sequence  LMERSLFLAMALSGNWGKPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMK
Template Known Secondary structure  TT
SSSTT

S
B





SS
GGGTTT
TT

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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   457..460.........470.........480.........490
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQH
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Template Sequence  VVTSAVGLVPPAMWLYYHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKR
Template Known Secondary structure  TT
SSTT
GGGS
TTSSS
TTSS
TTTS
S
TTS


S

ST
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   491........500.........510.........520.........530.........540.........550.........560.........570
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Query Sequence  SEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMT
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Template Sequence  SGAKMFPD. . VLFPKLKMIFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGN. . PFFTFVDRSVAPPGECREEWDAI
Template Known Secondary structure  T..TTGGG
SSB

TTGGG
SB

TT



SSS..

S

STT
B
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   616...620... ......630.........640.........650.........660........ .670.........680.........690.
 
   571....... .580.........590.........600.........610.........620.
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Query Sequence  SELAKRLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . VEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKK
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Template Sequence  ALILKKVGERAAARGLTEFNDHNGRKRRYDELYKKFTMDGHLLTNEDCLKEMVDINRAV. GVFAKDYTYEKFKKEGQTRF
Template Known Secondary structure  TT


TTS
GGGTTTTT

ST.TSS
TT



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   692.......700.........710.........720.........730.........740.........750 .........760.........770
 
   622.......630.........640.. .......650.........660.........670.........680........
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Query Sequence  RDPQGHHVAYKAFREDPQANP. . . . . . . . . . . . . LTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDP
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Template Sequence  LSMGTGVSRYAHANEVDVTKPIYPMRWHFDDKKVFPTHTRRAQFYLDHDWYLEA. . . . . . . . . GESLPTHKDT. . . . . PM
Template Known Secondary structure 
S
TTST
S


TTS


S
S



SSTTSSB





.........T
SS





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   771........780.........790.........800.........810.........820.... .....830.... ..
 
   689690.........700.........710.........720. ........730.........740.........750.........760......
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Query Sequence  LNKQYPLQLTGFHYKSRVHSTYGNVDVLKAACR. . QEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVV
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Template Sequence  VGGDHPFKITGGHPRVSIHSTHLTNSHLSRLHRGQPVVHMNSKDAAELGIKDGDMAKLFNDFADCEIMVRTAPNVQPKQC
Template Known Secondary structure  TTSS
S



SSSSTTTTTT
TTS
SS
TT

TT

SS
TTS
TT
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   837..840.........850.........860.........870.........880.........890.........900.........910......
 
   767..770.........780.........790....... ..800.. .......810...
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Query Sequence  ALGEGAWYDPDAKRVDKGGCINVLTTQRPSP. . LAKGN. . . . . . . . . . . . . . . PSHTNLVQVEK
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Template Sequence  IVYFWDAHQYKG. . . . . WKPYDILLIGMPKPLHLAGGYEQFRYYFMNGSPAPVTDRGVRVSIKK
Template Known Secondary structure 




GGGSGG.....G

GGGG





GGGG

SBTTB

BTTB
S

S


BT
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   917..920........ .930.........940.........950.........960.........970.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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