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Job DescriptionP18775
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank2Aligned Residues753
% Identity28%Templatec1y5iA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain; PDBTitle: the crystal structure of the narghi mutant nari-k86a
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90...... ...100.........110.........120.
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Query Sequence  HAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYD. . GLHQVRACLRGRSMRRRVYNPDRLK
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Template Sequence  DWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLK
Template Known Secondary structure  GGG

S


SSSS



TT


S



TTS


TT


TGGGGGTSTTB

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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   122.... ...130.........140.........150.........160.......
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Query Sequence  YPMKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNY
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Template Sequence  YPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFS
Template Known Secondary structure  S
TT
SST
TTTTSS


T
GGG
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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  GTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRM
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Template Sequence  PIPAMSMVSY. . . . . . . ASGARYLSLIGGTCLSFYD. WYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRT
Template Known Secondary structure 

GGGS.......T


TT.TTT
S
TS
S




TT
SS

SG
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   190......... 200.........210........ .220.........230.........240.........250.........260.
 
   248.250.........260.........270.........280.........290.........300.........310.. .......320.
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Query Sequence  SGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQ. . . . . . AFLDKYCVG
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Template Sequence  PDA. . . . HFFTEVRYKGTKTVAVTPDYAEI. AKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDM
Template Known Secondary structure  GG....GGGT

SS

.TSS


TT
TTTS

BST
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   262.. .....270.........280....... ..290.........300.........310.........320.........330......
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation 
 

  
        
 


  
               

 
  
    
 
  
                         
Template Sequence  PMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQ
Template Known Secondary structure  TB
SSS
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

S
SSBBTTT

B

B
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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   322.......330.........340....
Predicted Secondary structure  .........................................................







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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YDEKTLPASAPKNGHYKAYILGE
Query Conservation  ......................................................... 
                     
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Template Sequence  LSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSY
Template Known Secondary structure 


TTS
S

TT


TTS





SBTTS
TTB

SS

TTSBSST
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   417..420.........430.........440.........450.........460.........470.........480.........490......
 
   345....350.........360.........370..... ....380.........390.........400.........410.........
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Query Sequence  GPDGVAKTPEWASQITGVPADKIIKLAREIG. . . . . STKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSG
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Template Sequence  DD. VKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWA
Template Known Secondary structure  TS.

TT



TS

TSTTTT
TTSTT
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   497. .500.........510.........520.........530.........540.........550.........560.........570.....
 
   420....
Predicted Secondary structure 




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Query Sequence  AREGS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWL
Template Known Secondary structure 
SS



SSTTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
TTSS
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   576...580.........590.........600.........610.........620.........630.........640.........650.....
 
   425....430.........440.........450.........460.........470.........480.........490.........500
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Query Sequence  YSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEIL. . . .
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Template Sequence  PSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTE
Template Known Secondary structure 

SS
BSS
TTSTTS
TSS
BGGG
TTSSSSS

S

TTTTT
SSTT
S
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   656...660.........670.........680.........690.........700.........710.........720.........730.....
 
   501........510.........520.........530.........540.........550......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . QDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQV
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Template Sequence  HGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMH. . . PFIHPLSAA
Template Known Secondary structure 



S

TTTTT



SSS


SS





SSB

T
SB

TTSS


SSS...S

S
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   736...740.........750.........760.........770.........780.........790.........800... ......810..
 
   557..560.........570........
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Query Sequence  IKPRFECKTIYEMTSELAKRLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDY
Template Known Secondary structure  S

STT
B
TTTT



BTTSGGG


SSS


GGGTSS


BTTTB
G
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   813......820.........830.........840.........850.........860.........870.........880.........890..
 
   579580.........590.........600....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VEQQFTEGRTQEEWMRHLYAQSREAI. . . . . . . . .
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Template Conservation            
           
       
                                        
        
Template Sequence  PATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWA
Template Known Secondary structure  GGTB

TT
TT


B

SSTTTTSBB

S
TTTB
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   893......900.........910.........920.........930.........940.........950.........960.........970..
 
   605....610.........620.........630......... 640.........650.........660
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Query Sequence  . . . . . . . . . . . . . . . . . . PELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQ. . . . . . ANPLTTPSGKIEIYSQALADI
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Template Conservation        
                
      
      
   
       
 
         
  
 


 
 
       
Template Sequence  ALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMR
Template Known Secondary structure  SS

GGGTGGGTT
B

S




TTSSS


SSS


TT



SSTTSSB




S
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   973......980.........990.........1000.........1010.........1020.........1030.........1040.........1050..
 
   661........670.........680.........690.........700.........710. ........ 720.........730........
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Query Sequence  AATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYG. NVDVLKAA. CRQEMWINPLDAQKRGIHN
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Template Sequence  DFGESLLVYRPPID. TRSVKEVIGQKSNGNQEKALNFLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIAD
Template Known Secondary structure  TT
SS







.


STTTTTTT

SS



B
SSSBTTBTTT
TTSS
T

T
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   1053......1060...... ...1070.........1080.........1090.........1100.........1110.........1120.........1130.
 
   739740.........750.........760.........770.........780.. .......790....... ..800..
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Query Sequence  GDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVD. . . . KGGCINVLTTQRPSP. . LAKGN. . . . . . . . . .
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Template Sequence  NDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAHLAYGFNYY
Template Known Secondary structure  T
TTTTS
TT

B


SSSS

B
TTTSSB
B
GGGS





GGGS

SBTTBSB
TTTS
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   1132.......1140.........1150.........1160.........1170.........1180.........1190.........1200.........1210.
 
   803......810....
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Query Sequence  . . . . PSHTNLVQVEKV
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Template Conservation                
 
Template Sequence  GTVGSNRDEFVVVRKM
Template Known Secondary structure  S




TT

Template Predicted Secondary structure 









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   1212.......1220.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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