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Job DescriptionP18775
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank5Aligned Residues732
% Identity23%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70....... ..80.........90.........100.........110.........120.....
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Query Sequence  SAIPTKSDEKVIWSACTVNCGSRCPLRMHV. . VDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMK
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Template Sequence  TMALKTVDAKQTTSVCCY. CSVGCGLIVHTDKKTNRAINVEGDPDHP. . . . . INEGSLCAKGASTWQLAENERRPANPLY
Template Known Secondary structure 



TTTTS
SS.BTT


TTT


TT
T.....TTTT


TS
TTS
SS
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   2.......10......... 20.........30.........40....... ..50.........60.........70.....
 
   126...130.........140.........150.........160... ......170.........180.........190.........200.
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Query Sequence  RVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESI. . . . YLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHY
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Template Sequence  RAP. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEH
Template Known Secondary structure 
T..T
SS



TTS

S

TTS
TTB


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   76.. .80.........90.........100.........110.........120.........130.........140.........150...
 
   202.......210.........220.........230.........240.........250.........260.........270.........280.
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Query Sequence  GDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGR
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Template Sequence  QARIHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPI. . . . SFKWVMRAKDKGATLIHVDPRYTRT. STK
Template Known Secondary structure  GGG

S

S
SS
TGGGGG
SS

STT....TT

SS

TT.GGG
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   154.....160.........170.........180.........190.........200 .........210.........220..... ...
 
   282.......290.........300.........310.........320. .......
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Query Sequence  EDEWIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YDEKTLP
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Template Sequence  CDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNP
Template Known Secondary structure 
S


TT
TT
S
BGGGBBB
TT

TTTTTTTT
GGGG
B
B
TTS
B
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   230.........240.........250.........260.........270.........280.........290.........300.........
 
   329330.........340.........350.........360.........370....... ..380.........390.........400....
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Query Sequence  ASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGST. . . . KPAFISQGWGPQRHANGEIATRAISML
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Template Sequence  KRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSIN
Template Known Secondary structure 
B
TTS
STTBTT




GGGSTT





SS
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   405....410.........420.........430.........440.......
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Query Sequence  AILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASY
Template Known Secondary structure  TT
SSSTT
S

SBTTTT
BTTTTT

BTT

S





TT


GGGG
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   390.........400.........410.........420.........430.........440.........450.........460.........
 
   448.450.........460.........470.........480.........490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . WTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCH
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Template Sequence  IKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGAN. . . . SNKTREALTKLDWMVNVNIF
Template Known Secondary structure 
TTS
S

B
TT


STT


S

SBS....TT
SSS
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   470.........480.........490.........500.........510.........520..... ....530.........540.....
 
   516...520... ......530.........540.........550.........560.........570.........580..
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Query Sequence  MTSSAKYA. . . . . . . . . . . . . DILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQ
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Template Sequence  DNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSG. . . . RWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLA
Template Known Secondary structure 

TTTTGGGSTT

GGG


B

GGG


TT....


SS


TT
B
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   546...550.........560.........570.........580...... ...590.........600.........610.........620.
 
   583......590.........600....... ..610.........620...
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Query Sequence  FTEGRTQEEWMRHLYAQSREAIPEL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PTFEEFRKQGIFKKRD. . . . . . . . .
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Template Conservation                                                                  
               
Template Sequence  KTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTE
Template Known Secondary structure  S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
S
GGG

TTS
B

SSGGGTTST
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   622.......630.........640.........650.........660.........670.........680.........690.........700.
 
   624.....630.........640..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PQGHHVAYKAFREDPQANP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                               
                                                  
Template Sequence  KGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADK
Template Known Secondary structure  TGGG
B




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
STTTTS

SS
S

TT
T
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   702.......710.........720.........730.........740.........750.........760.........770.........780.
 
   643......650.........660.........670.........680......... 690...
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Query Sequence  . . . . . . . LTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPL. . . . . . . . . . . . . . . . . . . . . . NKQY
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Template Conservation              
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Template Sequence  EKGKRAFIMKPEGYAYLYGPGRE. . . . . . . . . . . . . DGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRY
Template Known Secondary structure  TT


S
TTSSSS
B
SS
TTST.............T
SS






SSS



SS
S

S
TT

SS

SS




TTS
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   782.......790.........800.... .....810.........820.........830.........840........
 
   694.....700........ .710......... 720.........730.........740.........750.........760.........770
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Query Sequence  PLQLTGFHYKSRVHS. . TYGNVDVLKAA. CRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGE
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Template Sequence  PFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQ
Template Known Secondary structure 


TT

TTSTSS
S

T

TT
TT
TT


TT
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   849850.........860.........870.........880.........890.........900.........910.........920........
 
   771. .......780.........790.........800.........810...
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Query Sequence  GA. . . . . WYDPDAKRVDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEK
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Template Conservation     
  
   
       
   
 

    

 

    
   
 
 
Template Sequence  VHMVGIPWHYGWSFPKNGGDAANILTPSVGNPNTGIPETKAFMVNVTK
Template Known Secondary structure 
S


TTSSTTS


GGGS

BSSS
SSBSB

S
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   929930.........940.........950.........960.........970......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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