Phyre 2 alignment of P0AD68 with d1nrfa

Job Description P0AD68
Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012

Rank 28 Aligned Residues 243

% Identity 22% Template d1nrfa_

SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	H	N	L	A	L	S	I	D	E	R	L	Q	A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.															.																.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.															.																.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.						.
Template Sequence	P	G	T	N	V	E	.	.	.	.	.	.	.	.	.	.	.	Y	E	D	Y	S	T	F	F	D	K	F	S	A	S	.	G	G	F	V	L	F	N	S	N	R	K	K	Y	T	I	.	.	.	.	.	.	Y	N	R	.	.	.	.	.	.	.	.	.	.	.	.	K	E	S	T	S	.	R	F	A	P	A	S
Template Known Secondary structure	S	S					.	.	.	.	.	.	.	.	.	.	.										T	T	T			.								T	T	T	T					.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.					S	.		B			G	G
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.															.																.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.						.
Template SS confidence
	354	.	.	.	.	.												360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.							.	390	.													.	.	.	.	.		.	.	.	400	.	.

	308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	K	P	M	V	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	K
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence	T	Y	K	V	F	S	A	L	L	A	L	E	S	G	I	I	T	K	N	D	S	H	M	T	W	D	.	.	.	.	G	T	Q	Y	P	Y	K	E	W	N	Q	D	Q	D	L	F	S	A	M	S	S	S	T	T	W	Y	F	Q	K	L	D	R	Q	I	G	E	D	H	L	R	H	Y	L	K	S	I	H	Y	G	N
Template Known Secondary structure	G	G												T	S	S		S	S				B				.	.	.	.					S	S	T	T	T	S	S		B									T																								T	T		T	T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
	403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.					.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence	A	T	N	L	G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	.	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T
Query Conservation																																		.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	D	F	S	V	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	W	L	D	G	S	L	Q	I	S	P	L	E	Q	V	N	I	L	K	K	F	Y	D	N	E	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	Q	S	N	I	E	T
Template Known Secondary structure				S		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	S	S	S		B															T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	479	480	.	.	.	.	.	.																					.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.																		.	.	.	.	.	.	520	.

	467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	V	H	M	M	E	S	V	A	L	P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																															.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																															.	.	.
Template Sequence	V	K	D	S	I	R	L	E	E	S	N	.	.	.	.	.	.	.	.	.	.	G	R	V	L	S	G	K	T	G	T	S	V	I	N	.	.	.	.	.	.	G	E	L	H	A	G	W	F	I	G	Y	V	E	T	A	D	N	T	F	F	F	A	V	H	I	Q	G	E	K	R	.	.	.	A	A	G	S	S	A
Template Known Secondary structure											T	.	.	.	.	.	.	.	.	.	.	T													S	.	.	.	.	.	.	S	S													S	S												S		S	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																															.	.	.
Template SS confidence
	522	.	.	.	.	.	.	.	530	.	.											.	.	.	.	.	.	.	540	.	.	.	.	.	.							.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.				.	.	.	580	.	.

	547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	P	V	F	G	A	I	M	G	G	V	L	R	T	M	N	I	E	P
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence	A	E	I	A	L	S	I	L	D	K	.	.	.	.	K	G	I	Y	P
Template Known Secondary structure											.	.	.	.	T	T	S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
	583	.	.	.	.	.	.	590	.	.					.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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