Job Description P0AD68 Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012 Rank 2 Aligned Residues 490 % Identity 47% Template c3pbqA_ PDB info PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem Resolution 1.70 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	Q	Q	V	S	T	S	R	G	M	I	T	D	R	S	G	R	P	L	A	V	S	V	P	V	K	A	I	W	A	D	P	K	E	V	H	D	A	G	G	I	S	V	G	D	R	W	K	A	L	A	N	A	L	N	I	P	L	D	Q	L	S	A	R	I	N	A	N	P	K	G	R	F	I	Y	L	A	R
Query Conservation
Alig confidence																																											.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		V	R	H	I	A	I	P	A	H	R	G	L	I	T	D	R	N	G	E	P	L	A	V	S	T	P	V	T	T	L	W	A	N	P	K	E	L	M	T	A	K	.	.	.	.	.	E	R	W	P	Q	L	A	A	A	L	G	Q	D	T	K	L	F	A	D	R	I	E	Q	N	A	E	R	E	F	I	Y	L	V	R
Template Known Secondary structure																	T	T	S																				T	T		G	.	.	.	.	.	G	G								T	T													T	T	T		S
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	N	P	D	M	A	D	Y	I	K	K	L	K	L	P	G	I	H	L	R	E	E	S	R	R	Y	Y	P	S	G	E	V	T	A	H	L	I	G	F	T	N	V	D	S	Q	G	I	E	G	V	E	K	S	F	D	K	W	L	T	G	Q	P	G	E	R	I	V	R	K	D	R	Y	G	R	V	I	E	D	I
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		G	L	T	P	E	Q	G	E	G	V	I	A	L	K	V	P	G	V	Y	S	I	E	E	F	R	R	F	Y	P	A	G	E	V	V	A	H	A	V	G	F	T	D	V	D	D	R	G	R	E	G	I	E	L	A	F	D	E	W	L	A	G	V	P	G	K	R	Q	V	L	K	D	R	V	Q	V	T	.	.	.	.
Template Known Secondary structure													T	T			T	T												T	T	G	G	G	G							B		T	T	S		B		S						T							B															.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	T	D	S	Q	A	A	H	N	L	A	L	S	I	D	E	R	L	Q	A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	K	N	A	K	P	G	K	T	L	A	L	S	I	D	L	R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	K	A	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I	D
Template Known Secondary structure		.	.	S			B							B	S																				T	T											T	T	T		B								S				T	T			S	S			T	T	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.														.
Query SS confidence																																		.	.														.
Query Sequence		V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	.	.	Y	R	I	N	G	H	E	I	K	D	V	A	R	.	Y	S	E	L	T	L	T	G	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	A	L	V	D
Query Conservation																																		.	.														.
Alig confidence																																		.	.														.
Template Conservation
Template Sequence		V	F	E	P	G	S	T	V	K	P	F	S	M	S	A	A	L	A	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	Y	T	I	R	D	V	S	R	N	S	R	Q	L	D	L	T	G	I	L	I	K	S	S	N	V	G	I	S	K	I	A	F	D	I	G	A	E	S	I	Y	S
Template Known Secondary structure			B	B		G	G	G	G											T	T	S			T	T						T	T	S					T	T						S	S				S										T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	Q	Q	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y	G	Y	G	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V
Template Known Secondary structure						T	T	T	T	S			S				T	T					B					S	S											T	T		S		B	B														T	T	T						B	S	B			S	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	Q	G	G	V	F	R	A	Q	V	P	G	Y	H	A	A	G	K	S	G	T	A	R	.	.	.	.	.	.	.	.	K	N	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V	V	V	I	D	E	P	S	K	A
Template Known Secondary structure		S																		S	T	T	S		G	G	G		B	T	T	B											.	.	.	.	.	.	.	.													S	T	T	S														S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.									490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V	L	R	T	M	N	I	E	P	D	A	L	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	F	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A	L	R	L	M	N	V	P	P	D	N	L	P	T
Template Known Secondary structure									T															T	T						S
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.