Job Description P0AD68 Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012 Rank 9 Aligned Residues 361 % Identity 28% Template c3lo7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis Resolution 2.05 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	R	R	Y	Y	P	S	G	E	V	T	A	H	L	I	G	F	T	N	V	D	S	Q	G	I	E	G	V	E	K	S	F	D	K	W	L	T	G	Q	P	G	E	R	I	V	R	K	D	R	Y	G	R	V	I	E	D	I	S	S	T	D	S	Q	A	A	H	N	L	A	L	S	I	D	E	R	L	Q	A	L
Query Conservation
Alig confidence																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	L	R	V	Y	P	N	P	E	V	Y	A	P	V	T	G	F	Y	S	L	R	Y	.	S	S	T	A	L	E	R	A	E	D	P	I	L	N	G	S	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	R	G	G	N	V	D	T	T	I	N	P	R	I	Q	Q	A
Template Known Secondary structure								S	S													T	T	T	.									T						T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		G	W	D	A	M	Q	Q	G	C	Y	.	.	G	P	C	K	G	A	V	V	A	L	E	P	S	T	G	K	I	L	A	L	V	S	S	P	S	Y	D	P	N	L	L	A	S	H	N	P	E	V	Q	A	Q	A	W	Q	R	L	G	D	N	P	A	S	P	L	T	N	R	A	I	S	E	T	Y	P	P	G	S	T
Template Known Secondary structure									B	T	T	.	.	B											T	T	T		B								S								T		S																T	T		T	T	S		T	T	T	S			B			G	G	G
Template Predicted Secondary structure												.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	K	P	M	V	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	.	.
Query Conservation																																																																																.	.
Alig confidence																																	.	.	.																																													.	.
Template Conservation																																	.	.	.
Template Sequence		F	K	V	I	T	T	A	A	A	L	A	A	G	A	T	E	T	E	Q	L	T	A	A	P	T	I	P	L	E	N	Y	.	.	.	P	C	G	D	E	P	T	V	S	L	R	E	A	F	V	K	S	C	N	T	A	F	V	Q	L	G	I	R	T	G	A	D	A	L	R	S	M	A	R	A	F	G	L	D	S	P
Template Known Secondary structure		G											T	T			T	T							S	B				B			.	.	.			S	S	S	S										T	T																								T	T	T	T	S
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
			387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure		.																																			.																				.																	.	.	.	.	.	.	.	.
Query SS confidence		.																																			.																				.																	.	.	.	.	.	.	.	.
Query Sequence		.	K	A	T	N	L	G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	.	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	.	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	.	.	.	.	.	.	.	.
Query Conservation		.																																			.																				.																	.	.	.	.	.	.	.	.
Alig confidence		.																						.	.	.	.	.									.																				.																	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		P	R	P	T	P	L	Q	V	A	E	S	T	V	G	P	I	P	D	S	A	A	L	.	.	.	.	.	G	M	T	S	I	G	Q	K	D	V	A	L	T	P	L	A	N	A	E	I	A	A	T	I	A	N	G	G	I	T	M	R	P	Y	L	V	G	S	L	K	G	P	D	L	A	N	I	S	T	T	V	G	Y
Template Known Secondary structure					S	S	S						B						S					.	.	.	.	.				T	T	T		T	T		B	B														T	T	T						B	S							T	T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.						.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
				456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N
Query Conservation		.	.
Alig confidence		.	.																						.	.																													.	.
Template Conservation																									.	.																													.	.
Template Sequence		Q	Q	R	R	A	V	S	P	Q	V	A	A	K	L	T	E	L	M	V	G	A	E	K	.	.	V	A	Q	Q	K	G	A	I	P	G	V	Q	I	A	S	K	T	G	T	A	E	H	G	T	D	P	R	H	.	.	T	P	P	H	A	W	Y	I	A	F	A	P	A	Q	A	P	K	V	A	V	A	V	L	V	E
Template Known Secondary structure							S																		.	.		S			T	T			T	T													S	S		T	T	T	.	.	S											S	T	T	S										T
Template Predicted Secondary structure																									.	.																													.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.			.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		534	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		D	P	Q	A	G	K	Y	.	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V	L	R
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		N	G	A	D	R	L	S	A	T	G	G	A	L	A	A	P	I	G	R	A	V	I	E	A	A	L	Q
Template Known Secondary structure		T				S	S	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.