Job Description P0AD68 Confidence 98.56% Date Thu Jan 5 11:20:08 GMT 2012 Rank 76 Aligned Residues 246 % Identity 14% Template c3humB_ PDB info PDB header:hydrolase/antibiotics Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 from2 staphylococcus aureus col in complex with cefotaxime Resolution 2.30 Å

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		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																															.	.	.																.
Query SS confidence																																																															.	.	.																.
Query Sequence		S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	.	.	.	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	.
Query Conservation																																																															.	.	.																.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	T	S	A	V	N	V	S	Q	T	G	Q	L	L	Y	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	D	T	K	W	N	P	A	S	M	T	K	L	M	T	M	Y	L	T	L	E	A	V	N	K	G	Q	L	S	L	D	D	T	V	T	M	T	N	K	E
Template Known Secondary structure				S							T	T		B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T						G	G	G	G														T	T	S	S		T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.																						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
						335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure		.	.	.	.																							.	.	.	.																	.	.	.	.	.	.
Query SS confidence		.	.	.	.																							.	.	.	.																	.	.	.	.	.	.
Query Sequence		.	.	.	.	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	V	L	.	.	.	.	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	.	.	.	.	.	.	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L	V	G	E	R	S	G	L
Query Conservation		.	.	.	.																							.	.	.	.																	.	.	.	.	.	.
Alig confidence		.	.	.	.																							.	.	.	.																	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Y	I	M	S	T	L	P	E	L	S	N	T	K	L	Y	P	G	Q	V	W	T	I	A	D	L	L	Q	I	T	V	S	N	S	S	N	A	A	A	L	I	L	A	K	K	V	S	K	N	T	S	D	F	V	D	L	M	N	N	K	A	K	A	I	G	M	K	N	T	H	F	V	N	P	T	G	.	.	.	.	.
Template Known Secondary structure					T	T		T	T								T	T															S														S	S	S																T		T	T		B		S	S	S	S		.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P	G	G	G
Query Conservation
Alig confidence		.																																						.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																						.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	E	N	S	R	L	R	S	F	A	P	T	K	Y	K	D	Q	E	R	T	V	T	T	A	R	D	Y	A	I	L	D	L	H	V	I	K	E	.	.	.	.	T	P	K	I	L	D	F	T	K	Q	L	A	P	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	V	T	Y	Y	T	F
Template Known Secondary structure		.	S						G	G	G	S		G	G	G	T	T					B																	.	.	.	.		T	T						T		S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S
Template Predicted Secondary structure		.																																						.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																.	.	.	.	.	.	240	.
		481	.	.	.	.	.	.	.	.					490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		G	V	K	A	A	I	K	G	Y	.	.	.	.	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.														.	.	.	.	.	.	.	.	.	.										.
Template Conservation																												.	.	.	.	.	.	.	.	.	.										.
Template Sequence		N	F	S	L	E	G	A	K	M	S	L	P	G	T	D	G	L	K	T	G	S	S	D	T	A	N	.	.	.	.	.	.	.	.	.	.	Y	N	H	T	I	T	T	K	R	.	G	K	F	R	I	N	Q	V	I	M	G	A	G	D	Y	K	N	L	G	G	E	K	Q	R	N	M	M	G	N	A	L	M	E	R
Template Known Secondary structure			T	T	S	T	T	S	T	T			T	T										T	T	T		.	.	.	.	.	.	.	.	.	.										.	T	T											S	B	T	T	T	T	B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.											.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		557	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	R	T	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	D	Q	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions