Job Description P0AD68 Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012 Rank 16 Aligned Residues 327 % Identity 17% Template c3dwkC_ PDB info PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer Resolution 3.10 Å

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		S	Q	A	A	H	N	L	A	L	S	I	D	E	R	L	Q	A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	.	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E
Query Conservation																																				.
Alig confidence																																				.																											.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	S	G	I	K	I	Y	T	N	M	D	K	D	V	Q	K	T	L	Q	N	D	V	D	N	G	S	F	Y	K	N	K	D	Q	Q	V	G	A	T	I	L	D	S	K	T	G	G	L	V	A	I	S	G	G	R	D	F	K	D	V	V	.	.	.	.	.	.	.	.	.	N	R	N	Q	A	T	D	P	H	P
Template Known Secondary structure		T	T	B	T																							S			S	S	T	T										T	T	T		B							S	T	T			T	T	T	.	.	.	.	.	.	.	.	.	S			T	T	T	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.										.	.	.	.	390	.	.	.	.	.
		305	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.
Predicted Secondary structure											.																					.														.	.																										.	.	.	.
Query SS confidence											.																					.														.	.																										.	.	.	.
Query Sequence		P	G	S	T	V	K	P	M	V	.	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	.	Y	R	I	N	G	H	E	I	K	D	V	A	R	.	.	Y	S	E	L	T	L	T	G	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	.	.	.	.	P	S	S	A	L
Query Conservation											.																					.														.	.																										.	.	.	.
Alig confidence											.																					.														.	.																										.	.	.	.
Template Conservation
Template Sequence		T	G	S	S	L	K	P	F	L	A	Y	G	P	A	I	E	N	M	K	W	A	T	N	H	A	I	Q	D	E	S	S	Y	Q	V	D	G	S	T	F	R	N	Y	D	T	K	S	H	G	T	V	S	I	Y	D	A	L	R	Q	S	F	N	I	P	A	L	K	A	W	Q	S	V	K	Q	N	A	G	N	D	A	P
Template Known Secondary structure			G	G	G	G					T								S				T	T	B						S			B	S	S	S		B				T	T															T	T																S		T	T
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																														.																						.
Query SS confidence																																														.																						.
Query Sequence		V	D	T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	.	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	.	R	P	L	S	I	T	K	V	D	P	P	V	P
Query Conservation																																														.																						.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.																						.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	F	A	A	K	L	G	L	N	Y	E	G	D	I	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	V	L	G	G	S	A	S	E	F	S	P	T	Q	L	A	S	A	F	A	A	I	A	N	G	G	T	Y	N	N	A	H	S	I	Q	K	V	V	T	R	D	G
Template Known Secondary structure								T	T				S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T		T	T																T	T	T	S						B								S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.																					.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		455									.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.						.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure			.	.	.	.	.	.	.	.																																																				.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.																																																				.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	.	.	.	.	.	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A
Query Conservation			.	.	.	.	.	.	.	.																																																				.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																																																				.	.	.	.	.													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	T	I	E	Y	D	H	T	S	H	K	A	M	S	D	Y	T	A	Y	M	L	A	E	M	L	K	G	T	F	K	P	Y	G	S	A	Y	G	H	G	V	S	G	V	N	M	G	A	K	T	G	T	G	T	Y	G	A	E	T	Y	S	Q	Y	N	L	P	D	N	A	A	K	D	V	W	I	N	G	F	.	.	.
Template Known Secondary structure														S														T	T	S	S	T	T	S	T	T	T	T		S		S	S														T	T					T	T			T	T											.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.									540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	.	.	.	.	.	.	.	.	Y	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V	L	R	T	M	N	I	E	P	D	A	L	T	T	G	D	K	N	E	F	V	I	N	Q	G	E	G	T	G	G	R	S
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence		.																		.	.	.	.	.	.	.	.																			.	.	.
Template Conservation		.																																												.	.	.
Template Sequence		.	T	P	Q	Y	T	M	S	V	W	M	G	F	S	K	V	K	Q	Y	G	E	N	S	F	V	G	H	S	Q	Q	E	Y	P	Q	F	L	Y	E	N	V	M	S	K	I	.	.	.	S	S	R	D	G	E	D	F	K	R	P	S	S	V	S	G	S	I	P	S	I	N	V	S	G	S	Q	D
Template Known Secondary structure		.		S	S										S	S			G	G	G	T	T	S								T														.	.	.	S			S								T	T					T	T					T	T	B
Template Predicted Secondary structure		.																																												.	.	.
Template SS confidence
			613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.				.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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