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Job DescriptionP0AD68
Confidence98.31%DateThu Jan 5 11:20:08 GMT 2012
Rank84Aligned Residues224
% Identity20%Templatec3a3eB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv)
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   259260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  SGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNT. . . . . . .
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Template Sequence  NAGVIAKNINQNQIIADY. . . . . . . . . . . . . . . . . . . . . NGSTFMLPASTQKVFTAVAAKLA. . LGDQFQFETALLSNGK
Template Known Secondary structure  TTTT.....................STT

B

GGGG..T
TT

S
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   42.......50......... 60.........70.........80.. .......90........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IQNGNLDGNLIVSFTGDPDLTRGQLYSLLAELKKQGIKKINGDLVLDTSVFPPAAANIDNNCFYAELDANKNPGEIVKIN
Template Known Secondary structure  B
SS
S




SS

TT
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S


B



SS

STT

S
SSSB
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   99100.........110.........120.........130.........140.........150.........160.........170........
 
   332.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IPYRINGH
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Template Sequence  VPAQFPIQVFGQVYVADSNEAPYCQLDVVVHDNNRYQVKGCLARQYKPFGLSFAVQNTDAYAAAIIQRQLRKLGIEFNGK
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TT



SSSSSS

GGG

SS

S
TT



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   199200.........210.........220.........230.........240.........250.........260.........270........
 
   340.........350. ........360.........370..... ....380.........390....
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Query Sequence  EIKDVARYSELT. . . . . . . . . . . . LTGVLQKSSNVGVSKLALAMPSSA. . . . . . . . . . . . . LVDTYSRFGLGKATNLGLV
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Template Sequence  VLLPQKPQQGQLLAKHLSKPLPDLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQKQGI. RFGNSILA
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T
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B
TTT
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TT
B

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   279280.........290.........300.........310.........320.........330.........340......... 350.......
 
   395....400.........410.........420.........430.........440.........450.........460.........470....
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Query Sequence  GERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESV
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Template Sequence  D. . . . . . . . . . . . . . . . . . GSGLSRHNLVAPKTMLSVLEYIAKNEDKLH. . . . . . . . . . . . . . . . . . . . . . . . . . LMETF
Template Known Secondary structure 
..................SSS

TT
BB
T
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GGGS
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   358 .360.........370.........380........ .390...
 
   475....480...... ...490.........500.........510.........520.........530.........540.......
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Query Sequence  ALPGGGGVKAAI. . . . . . . KGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSA
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Template Sequence  PIAGVDGTISGRGGLISPPLVKNVIAKTGSL. . . . . . . . . . . KGVYNLAGFMTNARGEKVAFVQFINGYSTGDLESKTKR
Template Known Secondary structure 
BTTTSGGGSS
GGGSSTTTTTT
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TTS
S


S
TT




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   394.....400.........410.........420.... .....430.........440.........450.........460..
 
   548.550.........560.
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Query Sequence  PVFGAIMGGVLRTM
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Template Sequence  APLVQFERNLYNEL
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   463......470......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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