Job Description P0AD68 Confidence 99.95% Date Thu Jan 5 11:20:08 GMT 2012 Rank 40 Aligned Residues 259 % Identity 19% Template c2wuqA_ PDB info PDB header:transcription Chain: A: PDB Molecule:beta-lactamase regulatory protein blab; PDBTitle: crystal structure of blab protein from streptomyces cacaoi Resolution 1.80 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	.	.
Query Conservation																																																																																.	.
Alig confidence																		.																	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																		.																	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	L	L	R	E	L	R	D	A	L	H	E	G	G	L	.	T	G	S	F	L	V	R	D	L	Y	T	G	E	E	L	G	.	.	.	.	.	.	I	D	P	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	T	A	S	L	V	K	L	P	L	A	L	A	T	L	E	R	I
Template Known Secondary structure															T	T		.									T	T	T						.	.	.	.	.	.		S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	G
Template Predicted Secondary structure																		.																	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.																	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
			320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure		.															.	.	.																						.	.	.	.
Query SS confidence		.															.	.	.																						.	.	.	.
Query Sequence		.	R	G	V	V	R	E	N	S	V	L	N	T	I	P	.	.	.	Y	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	.	.	.	.	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	K	A	T	N	L
Query Conservation		.															.	.	.																						.	.	.	.
Alig confidence		.															.	.	.																						.	.	.	.
Template Conservation
Template Sequence		R	L	G	E	V	D	G	A	Q	Q	I	E	V	A	P	G	R	I	T	T	P	G	P	T	G	L	S	R	F	R	H	P	A	R	V	A	V	D	D	L	L	Y	L	S	T	S	V	S	D	G	T	A	S	D	A	L	F	E	I	T	P	P	A	Q	V	E	Q	M	V	R	E	W	G	F	R	D	L	T	V	R
Template Known Secondary structure			T	T	S	S		T	T												S	S	S			G	G	G	G		S	S																S													S												T	T			S
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	H	R	V	P	Q	L	D	V	A	R	A	N	T	G	T	A	R	A	F	V	D	L	L	E	A	L	W	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	T	G	P	A	L	P	P	E	P	A	A	R	L	R	E	L	M
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	.	.	.	.	T				S	G	G	G		T	T	T	S																	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.														.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.															.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		E	S	V	A	L	P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S	.	.	A	P	V
Query Conservation																																																																													.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	N	L	L	R	H	R	L	A	P	D	F	A	S	D	A	A	T	W	S	S	K	T	G	T	L	.	.	.	.	.	.	.	.	.	.	L	N	L	R	H	E	V	G	V	V	E	H	A	D	G	Q	V	F	A	V	A	V	L	T	E	S	Q	V	P	A	D	S	Q	P	G	A	E	A	L	M	A	Q	V
Template Known Secondary structure			T					S	S	S						B	T	T											.	.	.	.	.	.	.	.	.	.	T	T											T	T	S												S	S			S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.											.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	A	I	M	G	G	V	L	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	R	L	R	D	R	L	R	E	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions