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Job DescriptionP0AD68
Confidence97.67%DateThu Jan 5 11:20:08 GMT 2012
Rank89Aligned Residues273
% Identity18%Templatec2qmiH_
PDB info PDB header:hydrolaseChain: H: PDB Molecule:pbp related beta-lactamase; PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   242.......250.........260.........270.........280.........290.........300.........310........
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Query Sequence  ALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTAL. . .
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Template Sequence  GKLESFIVEKMAERKVPGISISIIKD. . GDVVYAKGF. . . . . . . . GYRNVEARLPSTPETIYGIGSITKSFTALAIMKLV
Template Known Secondary structure  TT

T..T........TTTT

TT
B
GGG
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   319320.........330.........340.........350.........360
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Query Sequence  QRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EEGGLSLDDPVEK. . . FVNIK. . . LRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDME
Template Known Secondary structure  TTS

TTSBGGG...TSSS
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GGG


BTT
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TTT
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SGGGGG
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   74.....80...... ...90. ........100.........110.........120.........130.........140.......
 
   361....... .370.........380.. .......390.........400.........410...
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Query Sequence  . . . . . . . . . . . . . . NVGVSKLA. . . LAMPSSALVDTYSR. . . . . FGLGKATNLGLVGERSGLYPQKQRWSDIERA. . . . .
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Template Sequence  KWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPF
Template Known Secondary structure  GG

S
TTT




SS
TTGGGT
TT
B

TTSSSB


TTS


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   148.150.........160.........170.........180.........190.........200.........210.........220.......
 
   414.....420 .........430.........440.........450.........460.........470.........480.........490.
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Query Sequence  . TFSFGYG. LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRI
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Template Sequence  PYGITADGGLLSSVLDLAKYLKMYIERDE. . . . . . . . . . . . . . . . SIVSKEYIEKMETSYIKVPWE. IFGGEGYGYGLII
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TT

TTT


TT

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   228.230.........240.........250...... ...260.........270....... ..280.........290
 
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Query Sequence  AIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVL
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Template Sequence  YPNFLGEKLVGHSGSVGM. . YTGYIGYIPEKK. . IGVAVLENSSGY. . . . . . . PPSYIAMYALALLL
Template Known Secondary structure  TT
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   291........300........ .310.........320 .........330.. .......340......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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