Job Description P0AD68 Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012 Rank 20 Aligned Residues 314 % Identity 17% Template c2jciA_ PDB info PDB header:drug-binding protein Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b Resolution 2.5 Å

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		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		A	A	H	N	L	A	L	S	I	D	E	R	L	Q	A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	.	.	.	.	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.
Template Sequence		G	G	Y	K	I	T	T	T	I	D	Q	K	I	H	S	A	M	Q	S	A	V	A	D	Y	G	Y	L	L	D	D	G	T	G	R	V	E	V	G	N	V	L	M	D	N	Q	T	G	A	I	L	G	F	V	G	G	R	N	Y	Q	E	N	Q	.	.	.	.	.	.	.	.	.	N	N	H	A	F	D	T	K	R
Template Known Secondary structure		S							S																	G	G	G	G			S	S	S											T	T	T		B								S		T	T	T			.	.	.	.	.	.	.	.	.			T	T	T	T			B
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.										.	.	450	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.
Predicted Secondary structure												.																																		.	.	.																													.	.
Query SS confidence												.																																		.	.	.																													.	.
Query Sequence		E	P	G	S	T	V	K	P	M	V	.	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	R	I	N	G	H	E	I	K	D	V	A	R	.	.	.	Y	S	E	L	T	L	T	G	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	.	.	A	L	V
Query Conservation												.																																		.	.	.																													.	.
Alig confidence												.																																		.	.	.																													.	.
Template Conservation
Template Sequence		S	P	A	S	T	T	K	P	L	L	A	Y	G	I	A	I	D	Q	G	L	M	G	S	E	T	I	L	S	N	Y	P	T	N	F	A	N	G	N	P	I	M	Y	A	N	S	K	G	T	G	M	M	T	L	G	E	A	L	N	Y	S	W	N	I	P	A	Y	W	T	Y	R	M	L	R	E	N	G	V	D	V	K
Template Known Secondary structure				G	G	G	G					T							T	T	S			T	T						S			B		T	T	S		B			B	T	T	B				S											T		S													T	T
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																																		.											.	.	.	.	.
Query SS confidence																																																																		.											.	.	.	.	.
Query Sequence		D	T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	.	R	P	L	S	I	T	K	V	D	P	.	.	.	.	.
Query Conservation																																																																		.											.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.											.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	M	E	K	M	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	P	E	Y	G	I	E	S	L	P	M	G	G	G	I	E	V	T	V	A	Q	H	T	N	G	Y	Q	T	L	A	N	N	G	V	Y	H	Q	K	H	V	I	S	K	I	E	A	A	D	G	R	V
Template Known Secondary structure							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S					T	T	G	G	G	T	T	T			B														T	T	T						B	S							T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		537	.	.	540	.	.	.	.																					.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
						452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.										.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P	G	G	G	G	V	K	A	.	.	.	.	.	.	.	.	.	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V
Query Conservation		.	.	.	.																																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																											.							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																																.																														.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	E	Y	Q	D	K	P	V	Q	V	Y	S	K	A	T	A	T	I	M	Q	G	L	L	R	E	V	L	S	S	.	R	V	T	T	T	F	K	S	N	L	T	S	L	N	P	T	L	A	N	A	D	W	I	G	K	T	G	T	T	.	.	.	.	.	.	.	.	.	N	Q	D	E	N	M	W	L	M	L	S
Template Known Secondary structure													S																		T	.	T	S	S																T	S										.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																.																														.	.	.	.	.	.	.	.	.
Template SS confidence
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.		.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.										.	.	.	.	660	.	.	.	.	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.				.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.				.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure																									.	.	.																							.	.	.
Query SS confidence																									.	.	.																							.	.	.
Query Sequence		A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	.	.	.	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V	L	R	T	M	N	I	.	.	.	E	P	D	A	L	T	T	G	D	K	N	E	F	V	I	N	Q	G	E	G	T
Query Conservation																									.	.	.																							.	.	.
Alig confidence		.	.	.	.																				.	.	.																							.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	P	R	L	T	L	G	G	W	I	G	H	D	D	N	H	S	L	S	Q	Q	A	G	Y	S	N	N	S	N	Y	M	A	H	L	V	N	A	I	Q	Q	A	S	P	S	I	W	G	N	E	R	F	A	L	D	P	S	V	V	K	S	E	V	L	K	S	T	G	Q
Template Known Secondary structure		.	.	.	.		S	S										T	T						T	T	T	T	T	T																	S	T	T	S	S									T	T								T	T	T	S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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