Job Description P0AD68 Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012 Rank 23 Aligned Residues 237 % Identity 13% Template c2iwdA_ PDB info PDB header:antibiotic resistance Chain: A: PDB Molecule:methicillin resistance mecr1 protein; PDBTitle: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor2 domain. Resolution 2.4 Å

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		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	I	D	E	R	L	Q	A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	V	S	Y	K	K	L	N	Q	L	A	P	Y	F	.	.	.	.	.	.	.	K	G	F	D	G	S	F	V	L	Y	N	E	R	E	Q	A	Y	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	E	P	E	S	K	Q	R	Y	S	P	N	T	Y	K	I	Y	L
Template Known Secondary structure										G	G	G	G	G	G	G	.	.	.	.	.	.	.	T	T	S									T	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						B							T
Template Predicted Secondary structure																	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.								.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.																					.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L
Query Conservation
Alig confidence																					.	.	.	.																																																					.	.	.
Template Conservation																					.	.	.	.																																																					.	.	.
Template Sequence		A	L	M	A	F	D	Q	N	L	L	S	L	N	H	T	E	Q	Q	W	.	.	.	.	D	K	H	Q	Y	P	F	K	E	W	N	Q	D	Q	N	L	N	S	S	M	K	Y	S	V	N	W	Y	Y	E	N	L	N	K	H	L	R	Q	D	E	V	K	S	Y	L	D	L	I	E	Y	G	N	E	.	.	.	E	I
Template Known Secondary structure								T	T	S	S	B	T	T	B			B			.	.	.	.						S	S	G	G	G	S	S		B								T	T												S													T		T	T		.	.	.
Template Predicted Secondary structure																					.	.	.	.																																																					.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.					.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	.	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E
Query Conservation																													.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	N	E	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	N	E	S	S	L	K	I	S	A	I	E	Q	V	N	L	L	K	N	M	K	Q	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	H	F	D	N	K	A	I	E	K	V	E	N	S	M	T
Template Known Secondary structure			S		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S	S	S																	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S												T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		471	.	.	.	.	.																		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500																		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	L	P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S	A	P	V	F	G	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																															.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																															.	.	.
Template Sequence		L	K	Q	K	D	.	.	.	.	.	.	.	.	.	.	T	Y	K	Y	V	G	K	T	G	T	G	I	V	N	.	.	.	.	.	.	H	K	E	A	N	G	W	F	V	G	Y	V	E	T	K	D	N	T	Y	Y	F	A	T	H	L	K	G	E	D	N	.	.	.	A	N	G	E	K	A	Q	Q	I	S	E	R
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	.	S													T	.	.	.	.	.	.	T														S	S												S	S		.	.	.	B	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																															.	.	.
Template SS confidence
		517	.	.	520	.											.	.	.	.	.	.	.	.	530	.	.	.	.	.							.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.				.	.	.	.	570	.	.	.	.	.	.	.
		553	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	G	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	K	E	M
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions