Job Description P0AD68 Confidence 99.23% Date Thu Jan 5 11:20:08 GMT 2012 Rank 67 Aligned Residues 234 % Identity 19% Template c2bcfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase PDBTitle: crystal structure of a evolved putative penicillin-binding2 protein homolog, rv2911, from mycobacterium tuberculosis. Resolution 2.30 Å

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		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	I	P	D	G	P	A	Q	T	W	I	V	A	D	L	D	S	G	Q	V	L	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	N	V	A	H	P	P	A	S	T	I	K	V	L	L	A	L	V	A	L	D	E	L	D	L	N	S	T	V	V	A	D	V
Template Known Secondary structure								S		S							T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T			B			G	G	G															T	T							T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.						.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																.	.	.	.	.													.	.	.	.	.
Query SS confidence																												.	.	.	.																.	.	.	.	.													.	.	.	.	.
Query Sequence		I	P	Y	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	V	L	Q	.	.	.	.	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	.	.	.	.	.	S	S	A	L	V	D	T	Y	S	R	F	G	.	.	.	.	.	L	G	K	A	T	N	L	G	L	V	G	E	R
Query Conservation																												.	.	.	.																.	.	.	.	.													.	.	.	.	.
Alig confidence												.																.	.	.	.																.	.	.	.	.													.	.	.	.	.													.
Template Conservation												.																																																																					.
Template Sequence		A	D	T	Q	A	E	C	N	C	V	.	G	V	K	P	G	R	S	Y	T	V	R	Q	L	L	D	G	L	L	L	V	S	G	N	D	A	A	N	T	L	A	H	X	L	G	G	Q	D	V	T	V	A	K	X	N	A	K	A	A	T	L	G	A	T	S	T	H	A	T	T	P	S	G	L	D	G	P	G	G	.
Template Known Secondary structure		G	G	G			S	S				.				T	T															S													T	T																	T		T	T		B		S	S	S	S	S	S		B	T	T	B	.
Template Predicted Secondary structure												.																																																																					.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	A	S	T	A	H	D	L	V	V	I	F	R	A	A	X	A	N	P	V	F	A	Q	I	I	A	E	P	S	A	X	F	P	S	D	E	Q	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B	B															S										S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V
Query Conservation
Alig confidence		.																					.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation		.																					.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Sequence		.	N	Q	D	E	L	L	Q	R	Y	P	G	A	I	G	G	K	T	G	Y	T	.	.	.	.	.	.	.	.	.	.	N	A	A	R	K	T	F	V	G	A	A	A	R	G	G	R	R	L	V	I	A	X	X	Y	G	L	V	K	E	.	.	.	.	G	G	P	T	Y	W	D	Q	A	A	T	L	F	D	W	G
Template Known Secondary structure		.				T					S	T	T										.	.	.	.	.	.	.	.	.	.	T	T	T											T	T														T	.	.	.	.	T
Template Predicted Secondary structure		.																					.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template SS confidence
			215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.											.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		558	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	T	M	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	L	N	P
Template Known Secondary structure				S		T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions