Job Description P0AD68 Confidence 98.89% Date Thu Jan 5 11:20:08 GMT 2012 Rank 72 Aligned Residues 224 % Identity 20% Template c1xp4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase; PDBTitle: crystal structure of a peptidoglycan synthesis regulatory2 factor (pbp3) from streptococcus pneumoniae Resolution 2.80 Å

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		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	.	.	.	R	G	V	V	R	E	N	S	V	L	N	T
Query Conservation																																																																			.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	I	A	A	K	H	A	I	A	V	E	A	N	T	G	K	I	L	Y	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	T	Q	P	V	E	I	A	S	I	T	K	L	I	T	V	Y	L	V	Y	E	A	L	E	N	G	S	I	T	L	S	T	P	V	D	I
Template Known Secondary structure					S	B	S	S						T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S					G	G	G	G															T	S	S		T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		332	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.																									.	.	.	.																.	.	.	.	.	.
Query SS confidence				.	.	.	.																									.	.	.	.																.	.	.	.	.	.
Query Sequence		I	P	.	.	.	.	Y	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	V	L	Q	.	.	.	.	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	.	.	.	.	.	.	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L	V	G	E	R
Query Conservation				.	.	.	.																									.	.	.	.																.	.	.	.	.	.
Alig confidence				.	.	.	.																									.	.	.	.																.	.	.	.	.	.																								.	.
Template Conservation																																																																																.	.
Template Sequence		S	D	Y	P	Y	Q	L	T	T	N	S	E	A	S	N	I	P	X	E	A	R	N	Y	T	V	E	E	L	L	E	A	T	L	V	S	S	A	N	S	A	A	I	A	L	A	E	K	I	A	G	S	E	K	D	F	V	D	X	X	R	A	K	L	L	E	W	G	I	Q	D	A	T	V	V	N	T	T	G	.	.
Template Known Secondary structure											S	S		S	S					T	T																														S	S															T	T			S		B				S	S		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	.	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L
Query Conservation																																											.
Alig confidence		.	.	.	.																																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	L	N	N	E	T	L	G	D	N	I	Y	P	G	S	K	K	D	E	E	N	K	L	S	A	Y	D	V	A	I	V	A	R	N	L	I	K	K	Y	P	Q	V	L	E	I	T	K	K	P	S	S	T	F	A	G	X	T	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T
Template Known Secondary structure		.	.	.	.			G	G	G	S	T	T		S		T	T			T	T																						G	G	G					T		S					T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.																	220	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Y	X	L	E	G	X	P	A	Y	R	G	G	F	D	G	L	K	T	G	T	T	D	K	A	G	.	.	.	.	.	.	.	.	.	.	E	S	F	V	G	T	T	V	E	K	G	X	R	V	I	T	V	V	L
Template Known Secondary structure			T	T	S	T	T	S	T	T			T	T										T	T	T		.	.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions