Job Description P0AD68 Confidence 98.73% Date Thu Jan 5 11:20:08 GMT 2012 Rank 75 Aligned Residues 242 % Identity 16% Template c1tvfA_ PDB info PDB header:penicillin binding Chain: A: PDB Molecule:penicillin binding protein 4; PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4)2 from staphylococcus aureus Resolution 2.00 Å

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		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																												.	.	.																.	.	.	.
Query SS confidence																																																												.	.	.																.	.	.	.
Query Sequence		A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L	S	G	T	P	K	E	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	.	.	.	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	.	.	.	.
Query Conservation																																																												.	.	.																.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	V	N	V	S	Q	T	G	Q	L	L	Y	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	D	T	K	W	N	P	A	S	M	T	K	L	M	T	M	Y	L	T	L	E	A	V	N	K	G	Q	L	S	L	D	D	T	V	T	M	T	N	K	E	Y	I	M
Template Known Secondary structure								T	T	S	B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T			B			G	G	G															T	T	S	S		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.																						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
			335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.						.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																					.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.
Query SS confidence		.																					.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.
Query Sequence		.	R	I	N	G	H	E	I	K	D	V	A	R	Y	S	E	L	T	L	T	G	.	.	.	.	V	L	Q	K	S	S	N	V	G	V	S	K	L	A	L	A	M	P	.	.	.	.	.	.	S	S	A	L	V	D	T	Y	S	R	F	G	.	.	.	.	.	L	G	K	A	T	N	L	G	L	V	G	E	R	S
Query Conservation		.																					.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.
Alig confidence		.																					.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.								.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		S	T	L	P	E	L	S	N	T	K	L	Y	P	G	Q	V	W	T	I	A	D	L	L	Q	I	T	V	S	N	S	S	N	A	A	A	L	I	L	A	K	K	V	S	K	N	T	S	D	F	V	D	L	M	N	N	K	A	K	A	I	G	M	K	N	T	H	F	V	N	P	T	G	A	.	.	.	.	.	.	.
Template Known Secondary structure		T	T		T	T	S							T	T															S														S	S	S															T	T		T	T		B		S	S	S	S	S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	P	G
Query Conservation
Alig confidence		.	.	.	.																																					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	E	N	S	R	L	R	S	F	A	P	T	K	Y	K	D	Q	E	R	T	V	T	T	A	R	D	Y	A	I	L	D	L	H	V	I	K	E	.	T	P	K	I	L	D	F	T	K	Q	L	A	P	T	T	H	A	V	T	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	N	F	S
Template Known Secondary structure		.	.	.	.						G	G	G	S		G	G	G	T	T					B	B																.		T	T						T		S	S				T	T					.	.	.	.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure		.	.	.	.																																					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.														240	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	G	V	K	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K	K	V	G	P	D	G	R	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V	L
Query Conservation
Alig confidence												.														.	.	.	.	.	.	.	.	.	.																				.
Template Conservation												.														.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		L	E	G	A	K	M	S	L	P	G	.	T	D	G	L	K	T	G	S	S	D	T	A	N	.	.	.	.	.	.	.	.	.	.	Y	N	H	T	I	T	T	K	R	G	K	F	R	I	N	Q	V	I	M	.	G	A	G	D	Y	K	N	L	G	G	E	K	Q	R	N	M	M	G	N	A	L	M	E	R	S	F
Template Known Secondary structure		S	T	T	S	T	T			T	T	.										T	T	T		.	.	.	.	.	.	.	.	.	.										T	T									.			S	B	T	T	T	T	B
Template Predicted Secondary structure												.														.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.											.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		559	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions