Phyre 2 alignment of P0ABK2 with c2xq2A

Job Description P0ABK2
Confidence 4.48% Date Thu Jan 5 11:15:40 GMT 2012

Rank 12 Aligned Residues 323

% Identity 12% Template c2xq2A_

PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt

Resolution 2.73 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.
Predicted Secondary structure																																																																										.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.
Query Sequence	D	Y	E	V	L	R	F	I	W	W	L	L	V	G	V	L	L	I	G	F	A	V	T	D	G	F	D	M	G	V	G	M	L	T	R	F	L	G	R	N	D	T	E	R	R	I	M	I	N	S	I	A	P	H	W	D	G	N	Q	V	W	L	I	T	A	G	G	A	L	F	A	A	W	.	.	.	.	.	.	P
Query Conservation																																																																										.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.
Template Conservation
Template Sequence	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q
Template Known Secondary structure																									G	G	G														G	G	G	S		S	S			S	S	S	G	G	G	G	T	S		T	T					S	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

	77	.	.	80	.	.	.	.	.																		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence	M	V	Y	A	A	A	F	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	V	A	M	I	L	V	L	A	S	L	F	F	R	P	V	G	F	D	Y	R	.	.	.	S	K	I	E	E	T	R	W	R	N	M	W	D	W	G	I	F	I	G	S	F	V	P	P	L	V	I	G	V
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation
Template Sequence	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	A	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V
Template Known Secondary structure	S							T	T	S																T	T	T						T											T														S	T	B	G	G	G								T	S
Template Predicted Secondary structure
Template SS confidence
	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

	137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	F	G	N	L	L	Q	G	V	P	F	N	V	D	E	Y	L	R	L	Y	Y	T	G	N	F	F	Q	L	L	N	P	F	G	L	L	A	G	V	V	S	V	G	M	I	I	T	Q	G	A	T	Y	L	Q	M	R	T	V	G	E	L	H	L	R	T	R	A	T	A	Q	V	A	A	L	V	T	L	V	C	F	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T					T		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	354	.	.	.	.	.	360	.	.	.	.	.	.	.	.																								.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	G	V	W	V	M	Y	G	I	D	G	Y	V	V	K	S	T	M	D	H	Y	A	A	S	N	P	L	N	K	E	V	V	R	E	A	G	A	W	L	V	N	F	N	N	T	P	I	L	W	A	I	P	A	L	G	V	V	L	P	L	L	T	I	L	T	A	R	M	D	K	A	A	W	A	F	V	F	S	S
Query Conservation
Alig confidence																																				.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence	A	L	I	A	P	M	L	G	G	I	G	Q	C	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	.	.	.	.	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T
Template Known Secondary structure				G	G	G	G	G	G		B											T	T	T												.	.	.	.				T	T																							S	S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
	411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.					.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	T	L	A	C	I	I	L	T	A	G	I	A	M	F	P	F	V	M	P	S	S	T	M	M	N	A	S	L	T	M	W	D	A	T	S	S	Q	L	T	L	N	V	M	T	W	V	A	V	V	L	V	P	I	I	L	L	Y	T	A	W
Query Conservation
Alig confidence																	.	.																									.	.	.
Template Conservation																	.	.																									.	.	.
Template Sequence	L	L	F	T	M	V	V	I	A	F	T	S	L	S	T	S	.	.	I	N	D	D	D	P	K	G	I	S	V	T	S	S	M	F	V	T	D	R	S	F	N	I	.	.	.	A	A	Y	G	I	M	I	V	L	A	V	L	Y	T	L	F
Template Known Secondary structure																	.	.	S	S	S	S		T	T						S	S	S	S									.	.	.
Template Predicted Secondary structure																	.	.																									.	.	.
Template SS confidence
	487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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