Return to main results Retrieve Phyre Job Id

Job DescriptionP46118
Confidence95.86%DateThu Jan 5 12:03:57 GMT 2012
Rank73Aligned Residues102
% Identity13%Templated2etha1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40.........50.........60.........70.........80... ......90
Predicted Secondary structure 





















..






Query SS confidence 






































































. .






Query Sequence  HLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNR. . NVNEDDS
Query Conservation   

  
  

 


 
       

  

    

 


 

 



  

 


  
             ..       
Alig confidence 

















....





























.........









..






Template Conservation   

  
  

  
     .... 
  


         

  
  
   


......... 
     
 
   
 

  
Template Sequence  DXKTTELYAFLYVALFGP. . . . KKXKEIAEFLSTTKSNVTNVVDSLEKRGLV. . . . . . . . . VREXDPVDRRTYRVVLTEK
Template Known Secondary structure  S


....B
TTS
TTS.........
TTTSS

Template Predicted Secondary structure 





....






.........








Template SS confidence 















































































   2930.........40...... ...50.........60.........70...... ...80.........90.....
 
   91........100.........110.........120.......
Predicted Secondary structure 

Query SS confidence 




































Query Sequence  VESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQ
Query Conservation                 
  
   
    
      
  
Alig confidence 




































Template Conservation 
                     

 

   
   
 
Template Sequence  GKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNR
Template Known Secondary structure  TT

Template Predicted Secondary structure 



Template SS confidence 




































   96...100.........110.........120.........130..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions