Job Description P46118 Confidence 82.35% Date Thu Jan 5 12:03:57 GMT 2012 Rank 293 Aligned Residues 96 % Identity 7% Template c3ivpD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. Resolution 2.02 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	P	D	N	A	I	H	S	S	I	A	A	M	A	L	E	A	N	V	S	E	P	T	V	N	R	F	C	R	S	M	D	T	R	G	F	P	D	F	K	L	H	L	A	Q	S	L	A	N	G	T	P	Y	V	N	R	N	V	N	E	D	D	S	V	E	S	Y	T	G	K	I	F	E	S	A	M	A	T
Query Conservation
Alig confidence																																													.																						.	.	.	.	.	.	.	.	.
Template Conservation																																													.																						.	.	.	.	.	.	.	.	.
Template Sequence		I	K	E	A	R	K	K	Q	G	L	T	R	E	Q	V	G	A	X	I	E	I	D	P	R	Y	L	T	N	I	E	N	K	G	Q	H	P	S	L	Q	V	L	Y	D	.	L	V	S	L	L	N	V	S	V	D	E	F	F	L	P	A	S	S	Q	V	K	.	.	.	.	.	.	.	.	.	S	T	K	R	R	Q
Template Known Secondary structure									T	T											T	S											S												.						T			S					S		T	T	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80										.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		L	D	H	V	R	H	S	L	D	K	S	A	I	.	.	.	N	R	A	V	D	L	L	T	Q	A	K	K	I
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		L	E	N	K	I	D	N	F	T	D	A	D	L	V	I	X	E	S	V	A	D	G	I	V	K	S	K	E	V
Template Known Secondary structure						G	G	G																				T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions