Job Description P46118 Confidence 93.99% Date Thu Jan 5 12:03:57 GMT 2012 Rank 135 Aligned Residues 136 % Identity 13% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	L	D	H	V	R	H	S	L	D	K	S	A	I	N	R	A	V	D	L	L	T	Q	A	K	K	I	A	F	F	G	L	G	S	.	S	A	A	V	A	H	D	A	M	N	K	F	F	R	F	N	V	P	V	V	Y	S	D	D	I	V	L	Q	R	M	S	C	M	N	C	S	D	G	D	V	V	V	L	I	S
Query Conservation																																				.
Alig confidence											.	.																								.																									.	.
Template Conservation											.	.																																																	.	.
Template Sequence		N	L	K	R	T	W	E	K	L	.	.	L	L	A	A	R	A	I	V	A	I	E	N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	.	.	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D
Template Known Secondary structure											.	.										S	S		G	G	G							S																					S	S					.	.				T	T		S	S					S					S
Template Predicted Secondary structure											.	.																																																	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	G	R	T	K	N	L	V	E	L	A	Q	L	A	R	E	N	D	A	M	V	I	A	L	T	S	A	G	T	P	L	A	R	E	A	T	L	A	I	T	L	D	V	P	E	D	T	D	I	Y	M	P	M	V	S	R	L	A	Q	L	T	V	I	D	V	L	A	T	G	F	T	L	R	R	G
Query Conservation
Alig confidence						.	.	.	.																								.													.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																								.													.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	A	D	.	.	.	.	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	.	L	R	Y	V	D	I	A	I	P	C	N	N	.	.	.	.	.	.	.	.	.	.	K	G	A	H	S	V	G	L	M	W	W	M	L	A	R	E	V	L	R	M	R	G
Template Known Secondary structure		T	T	T	T	.	.	.	.											T									T	T			.		T	T		S					S		S	.	.	.	.	.	.	.	.	.	.	S																					S
Template Predicted Secondary structure						.	.	.	.																								.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.											.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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