Job Description P46118 Confidence 78.01% Date Thu Jan 5 12:03:57 GMT 2012 Rank 334 Aligned Residues 129 % Identity 12% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		100	.	.	.	.	.	.	.	.	.	110		.	.			.	.	.	.	.	.	.	120						.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure													.			.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.			.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	A	M	A	T	L	D	H	V	R	.	H	S	.	.	L	D	K	S	A	I	N	R	.	.	.	.	.	A	V	D	L	L	T	Q	A	.	.	.	.	.	.	.	.	.	.	.	K	K	I	A	F	F	G	L	G	S	S	A	A	V	A	H	D	A	M	N	K	F	F	R	F	N	V	P	V	V	Y	S
Query Conservation													.			.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.			.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	E	A	Q	A	V	D	Q	E	L	F	N	E	Y	Q	F	S	V	D	Q	L	X	E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y
Template Known Secondary structure															S	S																							S		G	G	G	S	S	S	S	S									S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		161	.	.	.	.	.	.	.	.	170																								.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Query Sequence		D	D	I	V	L	Q	R	M	S	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	N	C	S	D	G	D	V	V	V	.	.	.	.	L	I	S	H	T	G	R	.	T	K	N	L	V	E	L	A	Q	L	A	R	E	N	D	A	M	V	I	A	L	T	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Template Conservation
Template Sequence		Y	P	K	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V	D	A	I	F	G	F	S	F	K	G	D	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P	I	A	S	I	D	I	P	S
Template Known Secondary structure			S	S				S													T	T			B		S	S			S	S									S						S			T	T							T	T									T	T		S	S							.		T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	S	A	G	T	P	L	A	R	E	A	T	L	A	I	T	L	D	V	P
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		G	W	D	V	E	K	G	N	P	S	G	I	Q	P	D	L	L	I	S	L	T	A	P
Template Known Secondary structure		T	S	B	T	T	T	B		T	T	S				S						S	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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