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Job DescriptionP46118
Confidence93.62%DateThu Jan 5 12:03:57 GMT 2012
Rank147Aligned Residues138
% Identity12%Templatec1s1hB_
PDB info PDB header:ribosomeChain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
Resolution11.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  TLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISH
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Template Sequence  NVGKTWEKL. . VLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDP
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   48.50...... ...60.........70.........80.........90.........100.........110.........120.....
 
   185....190.........200.........210.........220.........230.........240.........250.........
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Query Sequence  TGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRG
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Template Sequence  RSD. . . . AQAIKEASYVNIPVIALTDLDSP. SEFVDVAIPCNN. . . . . . . . . . RGKHSIGLIWYLLAREVLRLRG
Template Known Secondary structure  TTT....T


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   126.. .130.........140.........150. ........160... ......170.........180.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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