Job Description P46118 Confidence 84.23% Date Thu Jan 5 12:03:57 GMT 2012 Rank 273 Aligned Residues 49 % Identity 16% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		E	H	L	S	K	S	E	R	K	V	A	E	V	I	L	A	S	P	D	N	A	I	H	S	S	I	A	A	M	A	L	E	A	N	V	S	E	P	T	V	N	R	F	C	.	.	.	.	R	S	M	D	T	R	G	F	P	D	F
Query Conservation																																														.	.	.	.
Alig confidence															.	.	.	.	.	.																										.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		A	W	L	D	P	K	E	A	T	Y	L	R	W	.	.	.	.	.	.	I	A	V	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L
Template Known Secondary structure															.	.	.	.	.	.		T	T	T										T	T																		T		S	S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions