Job Description P27305 Confidence 98.24% Date Thu Jan 5 11:43:51 GMT 2012 Rank 53 Aligned Residues 198 % Identity 17% Template c3m5wB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 campylobacter jejuni Resolution 2.32 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.							.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.																										.
Query SS confidence																																															.	.	.	.	.	.																										.
Query Sequence		D	T	Q	Y	I	G	R	F	A	P	S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	I	.	.	.	.	.	.	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	.	G	D	V
Query Conservation																																															.	.	.	.	.	.																										.
Alig confidence												.	.																						.												.	.	.	.	.	.																										.
Template Conservation												.	.																						.
Template Sequence		A	X	R	V	L	T	G	L	Q	P	.	.	S	G	D	L	H	I	G	N	Y	F	G	A	I	K	Q	X	V	D	A	Q	E	.	K	S	Q	X	F	X	F	I	A	N	Y	H	A	X	T	S	S	Q	D	G	E	K	L	K	Q	N	S	L	K	A	A	A	A	F	L	S	L	G	I	D	P	Q	K	S	V	F
Template Known Secondary structure												.	.		S			B							T								T	T	.	T	S																																				T			T	T	T	S
Template Predicted Secondary structure												.	.																						.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	Q	S	Q	R	H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	L	Q	S	D	V	K	E	V	X	E	L	Y	W	I	.	.	.	.	.	.	.	.	L	S	Q	F	T	P	X	G	L	L	E	R	A	H	S	Y	K	D	K	V	A	K	G	L	S	A	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				G	G	G		T									.	.	.	.	.	.	.	.			T	T								T											T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	.	.	.	.	.	.	.	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	L	F	S	Y	P	V	L	X	A	A	D	I	L	L	F	D	T	R	I	V	P	V	G	K	D	Q	I	Q	H	V	E	I	A	R	D	I	A	L	K	V	N	N	E	W	G	E	I	F	T	L	P	E	A	R	V	N	E	A	V	V	V	G	T	D	G	A	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																T	T		S						T	T	T																			S	S															B		T	T	S	S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		X	S	K	S	Y	Q	N	T	.	I	D	I	F	S	S	E	K	T	L	K	K	Q	I	S	S
Template Known Secondary structure				T	T	T	T			.		B	S	S	S											T
Template Predicted Secondary structure										.
Template SS confidence
		190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions