 |
Job Description | P27305 | Confidence | 98.79% | Date | Thu Jan 5 11:43:51 GMT 2012 |
Rank | 38 | Aligned Residues | 94 |
% Identity | 9% | Template | c3kflA_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:methionyl-trna synthetase; |
PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate
|
Resolution | 2.00 Å |
|
 |
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |
|
|  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | I | G | R | F | A | P | S | P | S | G | E | L | H | F | G | S | L | I | A | A | L | G | S | Y | L | Q | A | R | A | . |
. |
. |
. |
. |
R | Q | G | R | W | L | V | R | I | E | D | I | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | P | R | E | V | P | G | A | A | E | T | I | L | R | Q | L | E | H | Y |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |
|   |
|
|   |
|   |
|   |
|
|   | . | . | . | . | . |   |   |
|   |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |
|
|   |
|
|   |
|
|
|
|
|   |
|   |   |   |   |   |
|   |
|   |
|   |   |
|   |   |
|   |   |
|   |   |   |   |
|   |
|
|   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
F | A | T | T | P | I | Y | Y | V | N | A | S | P | H | I | G | H | V | Y | S | T | L | I | V | D | V | L | G | R | Y | H | R | V | K | G | E | E | V | F | V | M | T | G | T | D | E | H | G | Q | K | V | A | E | A | A | A | K | Q | G | V | S | P | M | D | F | T | T | S | V | S | S | E | F | K | Q | C | F | Q | E | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
212 | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . |
  |
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | |
|
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | L | H | W | D | G | D | V | L | W | Q | S | Q | . |
. |
R | H | D | A | Y | R | E | A | L | A | W | L | H | E | Q | G | L | S | Y | Y |
Query Conservation |   |
|
|   |   |
|
|   |   |   |   |
|
|   | . | . |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|
|   |
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
| . |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
Template Sequence |   |
N | Y | D | M | N | . |
Y | F | I | R | T | T | N | P | T | H | E | K | L | V | Q | D | I | W | K | K | L | A | A | K | G | D | I | Y | L |
Template Known Secondary structure |   |
T |
|
|
| S | . |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
292 | . | . | . | . | |
. | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|