Job Description P27305 Confidence 98.58% Date Thu Jan 5 11:43:51 GMT 2012 Rank 45 Aligned Residues 185 % Identity 17% Template c3jxeB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.																												.
Query SS confidence																																			.	.	.	.	.	.	.	.																												.
Query Sequence		P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	.	.	.	.	I	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	.	D	V	L	W	Q	S	Q	R	H	D	A
Query Conservation																																			.	.	.	.	.	.	.	.																												.
Alig confidence																																			.	.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		P	S	G	P	M	H	I	G	H	I	I	P	F	F	A	T	K	W	L	Q	E	K	F	G	V	N	L	Y	I	Q	I	T	D	D	E	K	F	L	F	K	E	N	L	T	F	D	D	T	K	R	W	A	Y	D	N	I	L	D	I	I	A	V	G	F	D	P	D	K	T	F	I	F	Q	N	S	E	F	T	K	I
Template Known Secondary structure			S	S			B																																			S	S																			T	T				T	T	S						T	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	M	A	I	P	I	A	.	.	.	.	.	.	.	.	K	K	I	N	F	S	M	A	K	A	V	F	G	F	T	E	Q	S	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	.	.	.	.	.	.	.			S													T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																							.																																										.	.
Query SS confidence																							.																																										.	.
Query Sequence		R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	.	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	.	.	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G
Query Conservation																							.																																										.	.
Alig confidence		.	.	.																			.																																										.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	G	M	I	F	F	P	A	I	Q	I	A	P	T	F	F	E	R	K	R	C	L	I	P	A	A	I	D	Q	D	P	Y	W	R	L	Q	R	D	F	A	E	S	L	G	Y	Y	K	T	A	A	L	H	S	K	F	V	P	S	L	T	S	L	S	G	K	M	S	A	S	K	P	E	T	A	I	Y	L	T
Template Known Secondary structure		.	.	.											G	G	G	G	S	S	S	S								G	G	G											T	T	T	T	T	S														S	S		S	S	S				T	T	S	G	G	G			B	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	R	P	V	L	I	A	A	L	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	P	E	D	V	E	K	K	V	W	K
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions