Job Description P27305 Confidence 98.66% Date Thu Jan 5 11:43:51 GMT 2012 Rank 42 Aligned Residues 187 % Identity 21% Template c3a05A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan Resolution 2.20 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.																													.
Query SS confidence																																			.	.	.	.	.	.	.	.																													.
Query Sequence		P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	.	.	.	.	I	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	.	V	L	W	Q	S	Q	R	H	D	A
Query Conservation																																			.	.	.	.	.	.	.	.																													.
Alig confidence																								.											.	.	.	.	.	.	.	.																													.
Template Conservation																								.
Template Sequence		P	S	G	K	F	H	F	G	H	K	L	T	V	D	Q	L	I	Y	L	Q	K	N	.	G	F	K	V	F	V	A	I	A	D	A	E	A	F	A	V	R	R	I	G	R	E	E	A	V	R	I	A	V	E	E	Y	I	A	N	M	I	A	L	G	L	D	P	K	D	T	E	F	Y	F	Q	T	N	R	G	T	P
Template Known Secondary structure				S			B																T	.	T															T	T														T	T								T			T	T	T						G	G	G	S
Template Predicted Secondary structure																								.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H
Query Conservation
Alig confidence													.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	R	L	I	Q	L	F	S	G	K	.	.	.	.	.	.	.	V	T	A	A	E	M	E	A	I	Y	G	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S	.	.	.	.	.	.	.	S										S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	.	.	.	.	.	.	.	.	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	.	.	.	.	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q
Query Conservation																								.	.	.	.	.	.	.	.																							.	.	.	.
Alig confidence		.	.																					.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	P	A	K	M	M	A	S	L	T	Q	A	A	D	I	L	H	V	Q	L	D	E	Y	G	G	Y	R	H	V	V	V	P	V	G	A	D	Q	D	P	H	L	R	L	T	R	D	L	A	D	R	M	A	G	V	V	E	L	E	R	P	A	S	T	Y	H	K	L	Q	P	G	L	D	G	R	K	M	S	S	S
Template Known Secondary structure		.	.																G	G	G	S	G	G	G	T											G	G	G														T	T	T	T	S														B		T	T	S	S	B			T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F	L	G	Q	Q	A	E
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		R	P	D	S	T	I	F	L	T	D	P	P	E	V	A	R	N	K	L	F	R	.	A	L	T	G	G
Template Known Secondary structure		S	G	G	G	S		B	T	T												T	.				S
Template Predicted Secondary structure																							.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions