Job Description P27305 Confidence 96.97% Date Thu Jan 5 11:43:51 GMT 2012 Rank 79 Aligned Residues 173 % Identity 21% Template c2rkjM_ PDB info PDB header:ligase/rna Chain: M: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: cocrystal structure of a tyrosyl-trna synthetase splicing2 factor with a group i intron rna Resolution 4.50 Å

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		24	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.										.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure						.																										.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence						.																										.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		P	S	G	E	.	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	.	.	.	.	.	.	R	I	E	D	.	.	.	.	.	.	.	.	.	I	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	.	.	.
Query Conservation						.																										.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence						.																										.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		P	T	A	P	S	L	H	V	G	H	L	L	P	L	M	P	L	F	W	M	Y	L	E	G	Y	K	A	F	T	L	I	G	G	S	T	A	K	I	G	D	P	T	G	D	A	T	M	N	M	T	K	I	H	Y	Q	L	K	K	L	W	E	N	V	D	T	Q	M	R	A	R	G	Y	E	A	D	W	A	R	K	R
Template Known Secondary structure		T	T	S	S	S		B	G	G	G														T									T	T	G	G	G	T																																T	T					S	S		B
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
			85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.																														.	.
Query SS confidence		.																														.	.
Query Sequence		.	V	L	W	Q	S	Q	R	H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	.	.	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H
Query Conservation		.																														.	.
Alig confidence		.											.																			.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	V	N	N	N	H	W	W	N	K	.	Q	P	M	L	E	V	L	R	R	V	G	H	A	L	R	I	G	P	M	L	S	R	D	T	V	K	N	K	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T					T	T	.										T	T	T	T			S					T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	E	K	L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	.	.	.	.	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.									.	.	.	.	.																.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.									.	.	.	.	.
Template Sequence		.	.	.	.	Q	G	D	G	V	S	F	A	.	.	.	.	.	E	F	T	Y	P	I	M	Q	G	W	D	W	F	E	L	F	Y	Q	Q	G	V	Q	M	Q	I	G	G	S	D	Q	Y	G	N	I	I	S	G	L	E	V	V	K	A	A	R	E	S	E	P	D	P	Q	E	R	K	Y	V	T	P	K	T	A	L
Template Known Secondary structure		.	.	.	.	T	S	S						.	.	.	.	.																												G	G	G																	T											S			S	T	T
Template Predicted Secondary structure		.	.	.	.									.	.	.	.	.
Template SS confidence
						236	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
						225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q	N	H
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		D	E	C	V	G	F	T	V	P	L	L	T	D	S	S	G	A	K	F	G	K	S	A	G
Template Known Secondary structure													B		S	S	S	S	B	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions