Job Description P27305 Confidence 98.12% Date Thu Jan 5 11:43:51 GMT 2012 Rank 57 Aligned Residues 194 % Identity 12% Template c2quiB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structures of human tryptophanyl-trna synthetase in2 complex with tryptophanamide and atp Resolution 2.40 Å

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		24	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.				90	.
Predicted Secondary structure						.																															.	.	.	.	.	.	.																												.						.	.	.
Query SS confidence						.																															.	.	.	.	.	.	.																												.						.	.	.
Query Sequence		P	S	G	E	.	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	I	.	.	.	.	.	.	.	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	.	V	L	W	Q	S	.	.	.	Q	R
Query Conservation						.																															.	.	.	.	.	.	.																												.						.	.	.
Alig confidence						.																															.	.	.	.	.	.	.																												.						.	.	.
Template Conservation
Template Sequence		P	S	S	E	A	M	H	V	G	H	L	I	P	F	I	F	T	K	W	L	Q	D	V	F	N	V	P	L	V	I	Q	M	T	D	D	E	K	Y	L	W	K	D	L	T	L	D	Q	A	Y	S	Y	A	V	E	N	A	K	D	I	I	A	C	G	F	D	I	N	K	T	F	I	F	S	D	L	D	Y	M	G	M
Template Known Secondary structure					S			B																		T																S	S																			T	T				T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F
Query Conservation
Alig confidence																.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		S	S	G	F	Y	K	N	V	V	K	I	Q	K	H	.	.	.	.	.	.	.	V	T	F	N	Q	V	K	G	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	T	D	S	D	C	I	G	.	.
Template Known Secondary structure			S	S											T	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S				.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.								.	.	260	.	.	.	.	.	.	.																																							.	.	270	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.												.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	.	.	.	.	.	.	.	.	.	.	.	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	.	.	A	K
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	I	S	F	P	A	I	Q	A	A	P	S	F	S	N	S	F	P	Q	I	F	R	D	R	T	D	I	Q	C	L	I	P	C	A	I	D	Q	D	P	Y	F	R	M	T	R	D	V	A	P	R	I	G	Y	P	K	P	A	L	L	H	S	T	F	F	P	A	L	Q	G	A	Q	T	K
Template Known Secondary structure		.	.	.	.	.	.	.										G	G	G	S	G	G	G						T	T		S										G	G	G											T	G	G	G	T														B	T	T	B	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F	L	G	Q	Q	A	E	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	A	S	D	P	N	S	S	I	F	L	T	D	T	A	K	Q	I	K	T	K	V	N	K	H	A	F	S	G	G	R	D
Template Known Secondary structure				S	S	S	T	T	S	S		B	T	T														S				S		S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions