Job Description P27305 Confidence 98.79% Date Thu Jan 5 11:43:51 GMT 2012 Rank 39 Aligned Residues 178 % Identity 20% Template c2j5bA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Resolution 2.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.
Predicted Secondary structure																																				.	.	.	.					.	.	.	.	.																									.
Query SS confidence																																				.	.	.	.					.	.	.	.	.																									.
Query Sequence		S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	I	D	P	P	.	.	.	.	.	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	.	V	L	W	Q	S	Q	R	H
Query Conservation																																				.	.	.	.					.	.	.	.	.																									.
Alig confidence																																				.	.	.	.					.	.	.	.	.																									.
Template Conservation
Template Sequence		E	P	S	G	R	I	H	I	A	Q	A	L	I	T	V	M	N	T	N	N	M	I	E	C	G	G	Q	M	I	I	Y	I	A	D	W	F	A	K	M	N	L	K	M	N	G	D	I	N	K	I	R	E	L	G	R	Y	F	I	E	V	F	K	A	C	G	I	N	L	D	G	T	R	F	I	W	A	S	E	F	I
Template Known Secondary structure					S	S		B																	T	T															T	T	G	G	G	G																			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I
Query Conservation
Alig confidence																.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	N	P	S	Y	I	E	R	M	L	D	I	A	.	.	.	.	.	.	.	E	F	S	T	I	S	R	V	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																.	.	.	.	.	.	.									T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																																												.	.
Query SS confidence																							.	.	.																																												.	.
Query Sequence		I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	.	.	.	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	.	.	A	K	L	S	K	Q	N	H	A	P	A
Query Conservation																							.	.	.																																												.	.
Alig confidence		.	.	.	.	.	.	.															.	.	.																																												.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	F	Y	P	C	M	Q	A	A	D	V	F	E	L	V	P	E	G	I	D	I	C	Q	L	G	I	D	Q	R	K	V	N	M	L	A	I	E	Y	A	N	D	R	G	L	K	I	P	I	S	L	S	H	H	M	L	M	S	L	S	G	P	K	K	K	M	S	K	S	D	P	Q	G	A
Template Known Secondary structure		.	.	.	.	.	.	.														S	S	T	T			S					B	G	G	G														T	T									B						T	T		S	S				S	T	T		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	M	D	D	T	E	Q	E	V	S	E	K	I	S	R
Template Known Secondary structure			B	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions