Job Description P27305 Confidence 98.50% Date Thu Jan 5 11:43:51 GMT 2012 Rank 47 Aligned Residues 190 % Identity 17% Template c2el7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus Resolution 2.50 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																								.												.	.	.	.									.	.	.	.																				.
Query SS confidence																								.												.	.	.	.									.	.	.	.																				.
Query Sequence		P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	.	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	I	D	P	P	R	E	V	P	.	.	.	.	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	.	D	V	L	W	Q	S	Q	R	H	D
Query Conservation																								.												.	.	.	.									.	.	.	.																				.
Alig confidence																								.												.	.	.	.									.	.	.	.																				.
Template Conservation
Template Sequence		P	S	G	E	I	H	I	G	N	Y	L	G	A	I	K	Q	W	V	A	I	G	E	K	L	G	R	D	A	F	F	C	I	V	D	Y	H	A	L	T	N	P	L	A	Y	D	P	S	T	L	A	Q	R	T	F	E	A	A	L	V	N	I	A	A	G	L	D	P	E	K	V	T	L	F	V	Q	S	H	V	P	E
Template Known Secondary structure		S		S			B						T													G	G	G							G	G	G	G	G	G	S	T	T	T	S																				T			T	T	T	S					G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	T	E	L	S	W	V	.	.	.	.	.	.	.	.	F	T	T	L	T	P	L	G	D	L	T	R	M	T	Q	F	K	D	K	A	S	K	Q	E	T	V	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									.	.	.	.	.	.	.	.				T	S							T	S							T	T	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.							.	.	.											.
Query SS confidence																																																		.	.	.	.	.	.							.	.	.											.
Query Sequence		H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	.	.	.	.	.	.	V	P	D	Y	I	H	.	.	.	L	P	L	A	L	N	P	Q	G	A	.	K	L	S	K	Q	N
Query Conservation																																																		.	.	.	.	.	.							.	.	.											.
Alig confidence		.	.	.																																														.	.	.	.	.	.							.	.	.											.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	G	L	L	M	Y	P	V	L	Q	A	A	D	I	L	I	Y	K	A	D	T	V	P	V	G	E	D	Q	V	Q	H	I	E	L	T	R	E	I	A	R	R	F	N	H	L	F	G	E	T	F	P	E	P	Q	A	L	L	N	P	E	A	P	R	V	P	G	I	D	G	K	A	K	M	S	K	S	L
Template Known Secondary structure		.	.	.																	T	T								G	G	G																			S	S											T	T	S				B		T	T	S	S	S	B			T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		G	.	N	T	I	G	L	L	E	P	E	E	S	I	W	Q	K	I	Q	H
Template Known Secondary structure		T	.				B	S	S	S											T
Template Predicted Secondary structure			.
Template SS confidence
		201		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions