Job Description P27305 Confidence 98.13% Date Thu Jan 5 11:43:51 GMT 2012 Rank 56 Aligned Residues 194 % Identity 22% Template c2cycB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii Resolution 2.20 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.										.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	.	I	D	P	P	R	E	V	P	G	.	.	.	.	.	.	.	.	.	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	V	L	W	Q	S
Query Conservation																																			.	.	.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	G	Y	I	H	L	G	T	G	L	M	A	G	A	K	I	A	D	F	Q	K	A	G	I	K	T	R	V	F	L	A	D	W	H	S	W	I	N	D	K	L	G	G	D	L	E	V	I	Q	E	V	A	L	K	Y	F	K	V	G	M	E	K	S	I	E	V	M	G	G	D	P	K	K	V	E	F	V	L	A
Template Known Secondary structure				S			B																	T	T		B													T	T	G	G	G	G												T												T	T			G	G	G	S					T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	I	L	E	K	G	D	Y	W	Q	T	V	I	D	I	S	K	N	V	T	.	.	.	.	.	.	.	L	S	R	V	M	R	S	I	T	I	M	G	R	Q	M	G	E	A	I	D	F	A	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T													T	T	S		.	.	.	.	.	.	.						T	T	G	G	G	G	T					T	T			T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.										.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	.	.	.	.	.	.	.	.	.	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	I	Y	P	M	M	Q	V	A	D	I	F	Y	Q	G	V	T	I	A	H	A	G	M	D	Q	R	K	A	H	V	I	A	I	E	V	A	Q	K	L	R	Y	H	P	I	V	H	E	G	E	K	L	K	P	V	A	V	H	H	H	L	L	L	G	L	Q	E	P	P	K	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.													T	T		S						G	G	G											G	G	G		S	S	S					T	T														B		S	S			S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
																237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	E	S	E	E	E	F	K	E	I	K	A	Q	M	K	M	S	K	S	K	P	Y	S	A	V	F	I	H	D	S	P	E	E	I	R	Q	K	L	R	K
Template Known Secondary structure		S			S												B	G	G	G	S		G	G	G	S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions