Job Description P27305 Confidence 99.59% Date Thu Jan 5 11:43:51 GMT 2012 Rank 26 Aligned Residues 274 % Identity 14% Template c2ct8A_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue Resolution 2.70 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	M	T	D	T	Q	Y	I	G	R	F	A	P	S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	.	.	A	R	Q	G	R	W	L	V	R	I	E	D	I	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	E	V	P	G	A	A	E	T	I
Query Conservation																																						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	L	M	K	K	F	Y	V	T	T	P	I	Y	Y	V	N	D	V	P	H	L	G	H	A	Y	T	T	I	A	A	D	T	I	A	R	Y	Y	R	L	R	D	Y	D	V	F	F	L	T	G	T	D	E	H	G	L	K	I	Q	K	K	A	E	E	L	G	I	S	P	K	E	L	V	D	R	N	A	E	R	F
Template Known Secondary structure				S	S												S	S	S																							T	T													S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	V	L	W	Q	S	Q	.	.	R	H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	.	.	.	.	.	.	.	.	.	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A
Query Conservation																						.	.																									.	.	.	.	.	.	.	.	.
Alig confidence														.								.	.																									.	.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		K	K	L	W	E	F	L	K	I	E	Y	T	.	K	F	I	R	T	T	D	P	Y	H	V	K	F	V	Q	K	V	F	E	E	C	Y	K	R	G	D	I	Y	L	G	E	Y	E	K	E	P	S	Y	F	F	R	L	S	K	Y	Q	D	K	L	L	E	L	Y	E	K	N	P	E	F	I	Q	P	D	Y	R	R	N
Template Known Secondary structure								T	T				S	.					T	T	S																	T	T	S																G	G	G	S											S	G	G	G	B		S
Template Predicted Secondary structure														.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.
Predicted Secondary structure																					.	.	.																														.																					.
Query SS confidence																					.	.	.																														.																					.
Query Sequence		A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	.	.	.	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	.	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	.	T	V	R	Q	I	S	L
Query Conservation																					.	.	.																														.																					.
Alig confidence																					.	.	.																														.																					.
Template Conservation
Template Sequence		E	I	I	S	F	V	K	Q	G	L	K	D	L	S	V	T	R	P	R	S	R	V	K	W	G	I	P	V	P	F	D	P	E	H	T	I	Y	V	W	F	D	A	L	F	N	Y	I	S	A	L	E	D	K	V	E	I	Y	W	P	A	D	L	H	L	V	G	K	D	I	L	R	F	H	T	V	Y	W	P	A	F
Template Known Secondary structure							T	T	T											T	T	T			S	S		B		T	T		T	T											T					T	T	T	T							S		S						G	G	G						T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		Y	Q	L	F	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	.	.	F	L	G	Q	Q	A	E	A	H	W	Q	D	F	S	V	E	Q	I	L	Q	S
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence		L	M	S	L	G	Y	E	L	P	K	K	V	F	A	H	G	W	W	T	V	E	G	K	K	M	S	K	T	L	G	N	V	V	D	P	Y	E	V	V	Q	E	Y	G	L	D	E	V	R	Y	F	L	L	R	E	V	P	F	G	Q	D	G	D	F	S	K	K	A	I	L	N	R
Template Known Secondary structure						T					S										S	S	S	S				T	T	T	T																								S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions