Job Description P27305 Confidence 97.97% Date Thu Jan 5 11:43:51 GMT 2012 Rank 62 Aligned Residues 189 % Identity 18% Template c1yi8C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl trrna synthetase ii from deinococcus2 radiodurans in complex with l-trp Resolution 2.10 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																													.
Query SS confidence																																		.	.	.	.	.	.																													.
Query Sequence		P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	.	.	.	.	.	.	D	I	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	.	D	V	L	W	Q	S	Q	R	H	D	A	Y	R
Query Conservation																																		.	.	.	.	.	.																													.
Alig confidence																																		.	.	.	.	.	.																													.
Template Conservation
Template Sequence		P	T	G	A	L	H	L	G	H	L	A	G	S	L	Q	N	R	V	R	L	Q	D	E	A	E	L	F	V	L	L	A	D	V	Q	A	L	T	D	H	F	D	R	P	E	Q	V	R	E	N	V	L	A	V	A	L	D	Y	L	A	A	G	L	D	P	Q	K	T	T	C	V	V	Q	S	A	V	P	E	L	A	E
Template Known Secondary structure			S	S			B							T											S																T	T																				T			T	T	T						G	G	G		T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H	R	R
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	Y	F	L	N	L	V	T	V	S	H	L	R	Q	N	P	T	V	K	A	E	I	A	Q	K	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure								T	T	S																			T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																																																			140
		177	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.
Predicted Secondary structure							.	.	.	.																																							.	.	.	.	.	.	.	.																			.
Query SS confidence							.	.	.	.																																							.	.	.	.	.	.	.	.																			.
Query Sequence		D	G	L	F	A	.	.	.	.	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	.	.	.	.	.	.	.	.	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	.	K	L	S	K	Q	N
Query Conservation							.	.	.	.																																							.	.	.	.	.	.	.	.																			.
Alig confidence							.	.	.	.																																							.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		E	R	V	P	A	G	F	F	V	Y	P	V	S	Q	A	A	D	I	A	A	F	G	A	T	L	V	P	V	G	D	D	Q	L	P	M	L	E	Q	T	R	E	I	V	R	R	F	N	A	L	Y	A	P	V	L	A	E	P	Q	A	Q	L	S	R	V	P	R	L	P	G	L	D	G	Q	A	K	M	S	K	S	L
Template Known Secondary structure		T								T													T		S						T	T	T																		S		S		S										S	S					T	T	S		S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		G	N	A	.	I	A	L	G	D	S	A	D	E	V	A	R	K	V	M	G
Template Known Secondary structure		T			.		B	T	T												T
Template Predicted Secondary structure					.
Template SS confidence
		221	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions