Job Description P27305 Confidence 99.64% Date Thu Jan 5 11:43:51 GMT 2012 Rank 24 Aligned Residues 275 % Identity 18% Template c1woyA_ PDB info PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of methionyl trna synthetase y225f mutant2 from thermus thermophilus Resolution 2.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.																	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																				.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	D	T	Q	Y	I	G	R	F	A	P	S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	.	.	A	R	Q	G	R	W	L	V	R	I	E	D	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	R	E	V	P	G	A	A	E	T	I	L	R
Query Conservation																																				.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	K	V	F	Y	V	T	T	P	I	Y	Y	V	N	A	E	P	H	L	G	H	A	Y	T	T	V	V	A	D	F	L	A	R	W	H	R	L	D	G	Y	R	T	F	F	L	T	G	T	D	E	H	G	E	T	V	Y	R	A	A	Q	A	A	G	E	D	P	K	A	F	V	D	R	V	S	G	R	F	K	R
Template Known Secondary structure															T	T	S																							T	T													S										T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.
Predicted Secondary structure																	.	.																							.	.	.	.	.	.	.																												.	.
Query SS confidence																	.	.																							.	.	.	.	.	.	.																												.	.
Query Sequence		Q	L	E	H	Y	G	L	H	W	D	G	D	V	L	W	.	.	Q	S	Q	R	H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	.	.	.	.	.	.	.	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	.	.	D	N	A	A	V
Query Conservation																	.	.																							.	.	.	.	.	.	.																												.	.
Alig confidence												.					.	.																							.	.	.	.	.	.	.																												.	.
Template Conservation												.
Template Sequence		A	W	D	L	L	G	I	A	Y	D	.	D	F	I	R	T	T	E	E	R	H	K	K	V	V	Q	L	V	L	K	K	V	Y	E	A	G	D	I	Y	Y	G	E	Y	E	G	L	Y	C	V	S	C	E	R	F	Y	T	E	K	E	L	V	E	G	L	C	P	I	H	G	R	P	V	E	R	R	K	E	G	N	Y
Template Known Secondary structure							T				S	.					T	T	S																	T	T													T	T	T	T					G	G	G	S	B	T	T	B		T	T	T		S	B
Template Predicted Secondary structure												.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		142	.	.	.	.	.													.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.									.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.									.	.	.	.
Query Sequence		R	I	R	Q	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	.	.	.	.	.	.	.	H	F	Q	G	V	T	E	I	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.									.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		F	F	R	M	E	K	Y	R	P	W	L	Q	E	Y	I	Q	E	N	P	D	L	I	R	P	E	G	Y	R	N	E	V	L	A	M	L	A	E	P	I	G	D	L	S	I	S	R	P	K	S	R	V	P	W	G	I	P	L	P	W	D	E	N	H	V	T	F	V	W	F	D	A	L	L	N	Y	V	S	A	L	D
Template Known Secondary structure						G	G	G												T	T	S			S											T	T	S											T	T	T			S	S				T	T								S					T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
																		199	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																		.																							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																		.																							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	G	A	D	L	I	E	.	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	.	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q	N	H	A	.	.	.	.	P	A	L	P	K	G	D	P	R	P	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																		.																							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																		.																							.	.	.	.
Template Conservation
Template Sequence		Y	P	E	G	E	A	Y	R	T	F	W	P	H	A	W	H	L	I	G	K	D	I	L	K	P	H	A	V	F	W	P	T	M	L	K	A	A	G	I	P	M	Y	R	H	L	N	V	G	G	F	L	L	G	P	D	G	R	K	M	S	K	T	L	G	N	V	V	D	P	F	A	L	L	E	K	Y	G	R	D	A
Template Known Secondary structure		T	T	T								G	G	G							G	G	G						T										T					S											T	T	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	A	L	Q	F	L	G	Q	Q	A	E	A	H	W	Q	D	F	S	V	E	Q	I	L	Q	S	A	V	K	N	W
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		L	R	Y	Y	L	L	R	E	I	.	.	P	Y	G	Q	D	T	P	V	S	E	E	A	L	R	T	R	Y	E	A	D	L
Template Known Secondary structure											.	.		T	T	S																T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions