Job Description P27305 Confidence 97.79% Date Thu Jan 5 11:43:51 GMT 2012 Rank 70 Aligned Residues 168 % Identity 17% Template c1jiiA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of s. aureus tyrrs in complex with sb-219383 Resolution 3.20 Å

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		24	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60															.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure						.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	G	E	.	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	.	I	D	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G
Query Conservation						.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.								.																						.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		P	T	A	D	S	L	H	I	G	H	L	L	.	P	F	L	T	L	R	R	F	Q	E	H	G	H	R	P	I	V	L	I	G	G	G	T	G	M	I	G	D	P	S	G	K	S	E	E	R	V	L	Q	T	E	E	Q	V	D	K	N	I	E	G	I	S	K	Q	M	H	N	I	F	E	F	G	T	D	H	G	A
Template Known Secondary structure			S	S	S	S		B						.												T									T	T	T	G	G	G				S	S		S	S																									S			S		S	S	S
Template Predicted Secondary structure														.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		D	V	L	W	Q	S	Q	R	H	D	A	.	.	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H
Query Conservation													.	.
Alig confidence													.	.												.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	V	N	N	R	D	W	L	G	Q	I	S	L	I	S	F	L	R	D	Y	G	K	H	.	.	.	.	.	.	.	V	G	V	N	Y	M	L	G	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T					T	T										T	G	G	G	.	.	.	.	.	.	.							T	T		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.									.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																										.
Query SS confidence																																		.	.	.	.	.	.	.	.																										.
Query Sequence		A	D	E	K	L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	.	.	.	.	.	.	.	.	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	.	G	W	K	V	P	D	Y	I	H	L	P	L	A	L
Query Conservation																																		.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																										.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	S	I	Q	S	R	L	E	H	G	I	S	Y	T	E	F	T	Y	T	I	L	Q	A	I	D	F	G	H	L	N	R	E	L	N	C	K	I	Q	V	G	G	S	D	Q	W	G	N	I	T	S	G	I	E	L	M	R	R	M	Y	G	Q	T	D	A	Y	G	L	T	I	P	L	V	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	T																															T									G	G	G															T	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	Q	G	A	K	L	S	K	Q	N	H	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	D	G	K	K	F	G	K	S	E	S	G	A
Template Known Secondary structure			S	S				T	T	B		S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions