Job Description P27305 Confidence 99.42% Date Thu Jan 5 11:43:51 GMT 2012 Rank 27 Aligned Residues 234 % Identity 20% Template c1f7uA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.
Predicted Secondary structure																											.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	.	.	Q	G	R	W	L	V	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	I	A	K	P	F	H	A	G	H	L	R	S	T	I	I	G	G	F	L	A	N	L	Y	E	K	L	G	W	E	V	I	R	M	N	Y	L	G	D	W	G	K	Q	F	G	L	L	A	V	G	F	E	R	Y	G	N	E	E	A	L	V	K	D	P	I	H	H	L	F	D	V	Y	V	R	I	N	K	D	I
Template Known Secondary structure			B	T	T	S			B	G	G	G																	T	T										B			S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
																										55	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.																																.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.																																.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	I	D	P	.	.	.	.	.	.	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	V	L	W	Q	S	Q	.	R	H	D	A	Y	R	E	A	L	A	W	L	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.																																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.																								.								.
Template Conservation																																																												.
Template Sequence		E	E	E	G	D	S	I	P	L	E	Q	S	T	N	G	K	A	R	E	Y	F	K	R	M	E	D	G	D	E	E	A	L	K	I	W	K	R	F	R	E	F	S	I	E	K	Y	I	D	T	Y	A	R	L	N	I	K	Y	D	.	V	Y	S	G	E	S	Q	V	S	K	E	S	M	L	K	A	I	D	L	F	K
Template Known Secondary structure				S	T	T	S	S						S	S													T																										T	T				S	.					G	G	G
Template Predicted Secondary structure																																																												.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	.
Query Conservation																																																																																	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	G	L	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	K	G	A	V	L	I	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	N	K	K	L	G	K	A	I	V	Q	K	S	D	G	T	T	L	Y	L
Template Known Secondary structure			T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T						G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T		T	T	T								T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.																											.	.	.	320	.	.	.	.	.	.	.																	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
				183	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.												.							.	.																									.
Query SS confidence		.	.												.							.	.																									.
Query Sequence		.	.	N	L	A	V	V	V	D	D	H	F	Q	.	G	V	T	E	I	V	.	.	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	.	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V
Query Conservation		.	.												.							.	.																									.
Alig confidence		.	.												.							.	.																									.											.	.	.
Template Conservation																																																											.	.	.
Template Sequence		T	R	D	V	G	A	A	M	D	R	Y	E	K	Y	H	F	D	K	M	I	Y	V	I	A	S	Q	Q	D	L	H	A	A	Q	F	F	E	I	L	K	Q	M	G	F	E	W	A	K	D	L	Q	H	V	N	F	G	M	V	.	.	.	Q	G	M	S	T	R	K	G	T	V	V	F	L	D	N	I	L	E	E	T
Template Known Secondary structure																		S								G	G	G														T	T		G	G	G	G	G										.	.	.		S			G	G	G	T				B
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.				.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		L	I	A	A	L	Q	F	L	G	Q	Q	A	E	A	H	W	Q	D	F	S	V	E	Q	I	L	Q	S	.	.	.	.	A	V	K	N	W	R	L	T	A	V	P	E	S	A	I	V	N	S
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.
Template Conservation
Template Sequence		K	E	K	M	H	E	V	M	K	K	N	E	N	K	Y	A	Q	I	E	H	P	E	E	V	A	D	L	V	G	I	S	A	V	M	I	Q	D	M	Q	G	K	R	I	N	N	Y	E	F	K
Template Known Secondary structure											T						T	T		S																				S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions