Job Description P52052 Confidence 97.95% Date Thu Jan 5 12:05:02 GMT 2012 Rank 31 Aligned Residues 88 % Identity 20% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		101	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.																	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	L	E	Q	L	.	G	A	P	T	V	L	P	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	E	N	G	L	I	L	V	T	G	A	T	G	S	G	K	S	T	T	L	A	A	M	V	G	Y	L	N	Q	H	A	D	A	H	I	L	T	L	E	D	P	V	E	Y	L	Y
Query Conservation								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.												.	.	.	.
Template Conservation																																																															.	.	.	.												.	.	.	.
Template Sequence		V	K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	N	S	T	F	F	S	V	S	S	S	D	.	.	.	.
Template Known Secondary structure				S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	.	.	.	.	T											.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.												.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	R	C	L	I	Q	Q	R	E	I	G	L	H	C	M	T	F	A	S	G	L	R	A	A	L	R	E	D	P	D	V	I	L	L	G	E	L
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V
Template Known Secondary structure		.	.	.	.	.	.		T	T	T	S	S	S	S		T	T	T										T	T	S	S							S	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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