Job Description P52052 Confidence 97.93% Date Thu Jan 5 12:05:02 GMT 2012 Rank 32 Aligned Residues 202 % Identity 16% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.
Predicted Secondary structure																																						.	.	.	.	.																																			.	.	.	.
Query SS confidence																																						.	.	.	.	.																																			.	.	.	.
Query Sequence		L	I	L	V	T	G	A	T	G	S	G	K	S	T	T	L	A	A	M	V	G	Y	L	N	Q	H	A	D	A	H	I	L	T	L	E	D	.	.	.	.	.	P	V	E	Y	L	Y	A	S	Q	R	C	L	I	Q	Q	R	E	I	G	L	H	C	M	T	F	A	S	G	L	R	A	A	L	R	.	.	.	.	E
Query Conservation																																						.	.	.	.	.																																			.	.	.	.
Alig confidence																																						.	.	.	.	.																																			.	.	.	.
Template Conservation
Template Sequence		I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K
Template Known Secondary structure									T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T																		T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		193	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.										.	250	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.									.	.																																						.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.									.	.																																						.	.	.	.	.	.	.	.	.
Query Sequence		D	P	D	V	I	L	L	G	E	L	R	.	.	.	.	D	S	E	T	I	R	L	A	.	.	L	T	A	A	E	T	G	H	L	V	L	A	T	L	H	T	R	G	A	A	Q	A	V	E	R	L	V	D	S	F	P	A	Q	E	K	D	P	.	.	.	.	.	.	.	.	.	V	R	N	Q	L	A	G	S	L
Query Conservation													.	.	.	.									.	.																																						.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.									.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A
Template Known Secondary structure		T		S										S	S																			S								G	G	G	G	G	G											S		T	T									S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	L	S	Q	K	L	E	V	D	K	Q	E	G	R	V	A	L	F	E	L	L	I	N	T	P	A	V	G	N	L	I	R	E	G	K	T	H	Q	L	P	H	V	I	Q	T	G	Q	Q	V	G	M	I	T	F	Q	Q	S	Y	Q	H	R	V	G	E	G	R
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		V	A	A	T	G	A	P	I	K	F	I	G	T	G	E	K	I	D	D	I	E	P	F	D	P	P	R	F	V	S	R	L	L	G	L	G	D	I	Q	G	L	L	E	K	F	K	E	L	E	K	E	.	.	V	E	I	K	E	E	D	I	E	R	F	L	R	G	K
Template Known Secondary structure				T	T										S	S	S	T	T															T	T	T	T														T	T	.	.													T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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