 |
Job Description | P52052 | Confidence | 95.86% | Date | Thu Jan 5 12:05:02 GMT 2012 |
Rank | 435 | Aligned Residues | 100 |
% Identity | 15% | Template | c3a1vB_ |
PDB info |
PDB header:transport protein | Chain: B: PDB Molecule:iron(ii) transport protein b; |
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
|
Resolution | 2.40 Å |
|
 |
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 190 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | V | T | G | A | T | G | S | G | K | S | T | T | L | A | A | M | V | G | Y | L | N | Q | H | A | D | A | H | I | L | T | L | E | D | P | V | E | Y | L | Y | A | S | Q | R | C | L | I | Q | Q | R | E | I | G | L | H | C | M | T | F | . |
. |
. |
. |
. |
. |
A | S | G | L | R | A | A | L | R | E | D | P | D | V |
Query Conservation |   |
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |
|   |   |   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | A | L | A | G | C | P | N | V | G | K | T | S | L | F | N | A | L | T | G | T | K | Q | Y | V | A | N | W | P | G | V | T | V | E | K | K | E | V | F | T | Y | K | G | Y | T | I | N | L | I | D | L | P | G | T | Y | S | L | G | Y | S | S | I | D | E | K | I | A | R | D | Y | L | L | K | G | D | A | D | L | V | I |
Template Known Secondary structure |   |
 |  |  |  |
|
| T | T | S | S |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  | S | T | T | S |
| S |  |  |  |
|
|  |  |  | T | T |  |  |  |  |  |  |  |
|
|
|
| S | S |
|
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
| S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
  |   |
197 | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | L | G | E | L | R | D | S | E | T | I | R | L | A | L | T | A | A | E | T | G | H | L | V | L |
Query Conservation |   |
|   |
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
L | V | A | D | S | V | N | P | E | Q | S | L | Y | L | L | L | E | I | L | E | M | E | K | K | V | I |
Template Known Secondary structure |   |
 |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|