Job Description P52052 Confidence 97.83% Date Thu Jan 5 12:05:02 GMT 2012 Rank 40 Aligned Residues 124 % Identity 22% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																										.	.	.	.	.																																		.	.
Query SS confidence																																										.	.	.	.	.																																		.	.
Query Sequence		S	E	N	G	L	I	L	V	T	G	A	T	G	S	G	K	S	T	T	L	A	A	M	V	G	Y	L	N	Q	H	A	D	A	H	I	L	T	L	E	D	.	.	.	.	.	P	V	E	Y	L	Y	A	S	Q	R	C	L	I	Q	Q	R	E	I	G	L	H	C	M	T	F	A	S	G	L	R	A	A	L	.	.
Query Conservation																																										.	.	.	.	.																																		.	.
Alig confidence																																										.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K
Template Known Secondary structure			S	S									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
				191	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.											.	.	.	.										.	.
Query SS confidence		.	.											.	.	.	.										.	.
Query Sequence		.	.	R	E	D	P	D	V	I	L	L	G	.	.	.	.	E	L	R	D	S	E	T	I	R	.	.	L	A	L	T	A	A	E	T	G	H	L	V	L	A	T	L	H	T	R	G	A	A	Q	A	V	E	R	L	V	D	S	F
Query Conservation		.	.											.	.	.	.										.	.
Alig confidence		.	.											.	.	.	.										.	.
Template Conservation
Template Sequence		A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D
Template Known Secondary structure						T		S										S	S																			S								S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions