Job Description P52052 Confidence 100.00% Date Thu Jan 5 12:05:02 GMT 2012 Rank 6 Aligned Residues 274 % Identity 22% Template c2gzaB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:type iv secretion system protein virb11; PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		M	E	E	I	V	A	L	S	V	K	H	N	V	S	D	L	H	L	C	S	A	W	P	A	R	W	R	I	R	G	R	M	E	A	A	P	.	.	.	F	D	T	P	D	V	E	E	L	L	R	E	W	L	D	D	D	Q	R	A	I	L	L	E	N	G	Q	L	D	F	A	V	S	L	A	E	N	Q	R	L	R
Query Conservation																																						.	.	.
Alig confidence								.	.	.																												.	.	.
Template Conservation								.	.	.
Template Sequence		L	R	P	W	L	D	.	.	.	D	P	Q	I	T	E	V	C	V	N	R	P	G	E	V	F	C	E	R	A	S	A	W	E	Y	Y	A	V	P	N	L	D	Y	E	H	L	I	S	L	G	T	A	T	A	R	F	V	D	Q	D	I	S	D	S	R	P	V	L	S	A	I	L	P	M	G	E	R	I	Q	I	V
Template Known Secondary structure		G					S	.	.	.		T	T							S	S	T	T							T	T								T	T																	T	T				S	T	T	S								T	T	S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		29	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																														.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	A	F	A	Q	R	H	G	I	S	L	A	L	R	L	L	P	S	H	C	P	Q	L	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	P	T	V	L	P	E	L	L	K	S	E	N	G	L	I	L	V	T	G	A	T	G
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	P	A	C	E	H	G	T	I	S	V	T	I	R	K	P	S	F	T	R	R	T	L	E	D	Y	A	Q	Q	G	F	F	K	H	V	R	P	M	S	K	S	L	T	P	F	E	Q	E	L	L	A	L	K	E	A	G	D	Y	M	S	F	L	R	R	A	V	Q	L	E	R	V	I	V	V	A	G	E	T	G
Template Known Secondary structure			T	T	T	B		T	T																						T	T	S	S	T	T						T	T															T												T	T								S	T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	S	T	T	L	A	A	M	V	G	Y	L	N	Q	H	A	D	A	H	I	L	T	L	E	D	P	V	E	Y	L	Y	A	S	Q	R	C	L	I	Q	Q	R	E	I	G	L	H	C	M	T	F	A	S	G	L	R	A	A	L	R	E	D	P	D	V	I	L	L	G	E	L	R	D	S	E	T	I	R	L
Query Conservation
Alig confidence																		.	.																									.	.	.																																			.
Template Conservation																		.	.																									.	.	.																																			.
Template Sequence		S	G	K	T	T	L	M	K	A	L	M	Q	E	I	P	F	.	.	D	Q	R	L	I	T	I	E	D	V	P	E	L	F	L	P	D	H	P	N	H	V	H	L	.	.	.	F	Y	P	P	V	T	A	A	T	L	L	R	S	C	L	R	M	K	P	T	R	I	L	L	A	E	L	R	G	G	E	A	Y	D	.
Template Known Secondary structure		S	S										T	T	S		T	.	.	T	S							S	S	S					T	T		S	S					.	.	.															T	T	S			S					S				S	T					.
Template Predicted Secondary structure																		.	.																									.	.	.																																			.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure												.																												.	.	.	.	.	.
Query SS confidence												.																												.	.	.	.	.	.
Query Sequence		A	L	T	A	A	E	T	G	H	L	.	V	L	A	T	L	H	T	R	G	A	A	Q	A	V	E	R	L	V	D	S	F	P	A	Q	E	K	D	.	.	.	.	.	.	P	V	R	N	Q	L	A	G	S	L	R	A	V	L	S	Q	K	L	E	V	D	K	Q	E	G	R	V	A	L	F	E	L	L	I	N	T
Query Conservation												.																												.	.	.	.	.	.
Alig confidence												.																												.	.	.	.	.	.																												.						.
Template Conservation																																																																									.						.
Template Sequence		F	I	N	V	A	A	S	G	H	G	G	S	I	T	S	C	H	A	G	S	C	E	L	T	F	E	R	L	A	L	M	V	L	Q	N	R	Q	G	R	Q	L	P	Y	E	I	I	R	R	L	L	Y	L	V	V	D	V	V	V	H	V	H	N	G	V	H	D	G	T	G	R	H	.	I	S	E	V	W	.	Y	D
Template Known Secondary structure								T	T											S	S													T	T	S	T	T	G	G	G	S																								S	S	S			S		.						.
Template Predicted Secondary structure																																																																									.						.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.		.	.
		284	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	T	K
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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