Job Description P52052 Confidence 100.00% Date Thu Jan 5 12:05:02 GMT 2012 Rank 2 Aligned Residues 320 % Identity 41% Template c2gszE_ PDB info PDB header:protein transport Chain: E: PDB Molecule:twitching motility protein pilt; PDBTitle: structure of a. aeolicus pilt with 6 monomers per2 asymmetric unit Resolution 4.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		M	N	M	E	E	I	V	A	L	S	V	K	H	N	V	S	D	L	H	L	C	S	A	W	P	A	R	W	R	I	R	G	R	M	E	A	A	.	.	.	.	P	F	D	T	P	D	V	E	E	L	L	R	E	W	L	D	D	D	Q	R	A	I	L	L	E	N	G	Q	L	D	F	A	V	S	L	A	E	N	Q
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.
Template Conservation
Template Sequence		L	K	I	L	E	I	I	K	E	A	I	E	L	G	A	S	D	I	H	L	T	A	G	A	P	P	A	V	R	I	D	G	Y	I	K	F	L	K	D	F	P	R	L	T	P	E	D	T	Q	K	L	A	Y	S	V	X	S	E	K	H	R	Q	K	L	E	E	N	G	Q	V	D	F	S	F	G	V	R	G	V	G
Template Known Secondary structure														T	T		S						S	S	S							T	T						T	T	S	S		S			S	T							T	T	S											S	S	B								T	T	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	R	G	S	A	F	A	Q	R	H	G	I	S	L	A	L	R	L	L	P	S	H	C	P	Q	L	E	Q	L	G	A	P	T	V	L	P	E	L	L	K	S	E	N	G	L	I	L	V	T	G	A	T	G	S	G	K	S	T	T	L	A	A	M	V	G	Y	L	N	Q	H	A	D	A	H	I	L	T	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	R	A	N	V	F	Y	Q	R	G	S	V	A	A	A	L	R	S	L	P	A	E	I	P	E	F	K	K	L	G	L	P	D	K	V	L	E	L	C	H	R	K	X	G	L	I	L	V	T	G	P	T	G	S	G	K	S	T	T	I	A	S	X	I	D	Y	I	N	Q	T	K	S	Y	H	I	I	T	I	E
Template Known Secondary structure								B			S	S	S										S	S				G	G	G	G								G	G	G	G		S	S									S	S	S																	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	V	E	Y	L	Y	A	S	Q	R	C	L	I	Q	Q	R	E	I	G	L	H	C	M	T	F	A	S	G	L	R	A	A	L	R	E	D	P	D	V	I	L	L	G	E	L	R	D	S	E	T	I	R	L	A	L	T	A	A	E	T	G	H	L	V	L	A	T	L	H	T	R	G	A	A	Q	A	V	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	I	E	Y	V	F	K	H	K	K	S	I	V	N	Q	R	E	V	G	E	D	T	K	S	F	A	D	A	L	R	A	A	L	R	E	D	P	D	V	I	F	V	G	E	X	R	D	L	E	T	V	E	T	A	L	R	A	A	E	T	G	H	L	V	F	G	T	L	H	T	N	T	A	I	D	T	I	H	R
Template Known Secondary structure		S	S			S					S	S	S							B	T	T	T	B	S										T	T	S			S					S				S												T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	D	S	F	P	A	Q	E	K	D	P	V	R	N	Q	L	A	G	S	L	R	A	V	L	S	Q	K	L	E	V	D	K	Q	E	G	R	V	A	L	F	E	L	L	I	N	T	P	A	V	G	N	L	I	R	E	G	K	T	H	Q	L	P	H	V	I	Q	T	G	Q	Q	V	G	M	I	T	F	Q	Q	S
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.
Template Sequence		I	V	D	I	F	P	L	N	Q	Q	E	Q	V	R	I	V	L	S	F	I	L	Q	G	I	I	S	Q	R	L	L	P	K	I	G	G	G	R	V	L	A	Y	E	L	L	I	P	N	T	A	I	R	N	L	I	R	E	N	K	L	Q	Q	V	Y	S	L	X	.	.	.	.	.	.	Q	X	Q	T	X	N	Q	T
Template Known Secondary structure		T	G	G	G	S		T	T	T	T																							S	S	S	S																				T	T								T		.	.	.	.	.	.			B		T	T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.							.	320	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	H	R	V	G	E	G	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	K	L	Y	K	Q	G	L	I
Template Known Secondary structure							T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions