Return to main results Retrieve Phyre Job Id

Job DescriptionP52052
Confidence99.62%DateThu Jan 5 12:05:02 GMT 2012
Rank9Aligned Residues104
% Identity21%Templatec1xx6B_
PDB info PDB header:transferaseChain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   118.120... ......130.........140.........150.........160.........170.........180.........190......
Predicted Secondary structure 



.


































Query SS confidence 





.








































































Query Sequence  SENGLI. LVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDV
Query Conservation     


.

 
 








 


          
 




 
               
         
   

  

 
Alig confidence 





.




















.

















..................














Template Conservation     
 
 

 


 




 
       .      
   
   
   ..................    
      
 

Template Sequence  KDHGWVEVIVGPXYSGKSEELIRRIRRA. KIAKQKIQVFKPEAVAIK. . . . . . . . . . . . . . . . . . NSREILKYFEEDTEV
Template Known Secondary structure  TT


STTSS.TT





S..................SST

TT
S
Template Predicted Secondary structure 








.











..................





Template SS confidence 















































































   5....10.........20.........30.. .......40.........50 .........60.....
 
   197..200... ......210.........220.. .......230.........240
Predicted Secondary structure 



..




....


Query SS confidence 






. .


















. . . .

















Query Sequence  ILLGELR. . DSETIRLALTAAETGHLVL. . . . ATLHTRGAAQAVERLVDS
Query Conservation 
 




..
 


  
  

 




 ....




 

  

 

   
Alig confidence 






..


















....

















Template Conservation 
 


 

           

  
  

  

  
     
     
   
Template Sequence  IAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDXDFRGKPFGPIPELXAI
Template Known Secondary structure 
SGGGS
TTT

SB
TTS
B
TT
Template Predicted Secondary structure 














Template SS confidence 

















































   85....90.........100.........110.........120.........130....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions