Job Description P0AGK1 Confidence 2.47% Date Thu Jan 5 11:29:22 GMT 2012 Rank 58 Aligned Residues 170 % Identity 13% Template c3ucaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of isoprenoid synthase (target efi-501974) from2 clostridium perfringens Resolution 2.00 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		P	I	L	M	L	L	S	Y	Y	I	Y	K	S	D	Y	K	K	I	L	T	P	A	M	A	I	E	M	I	H	T	Y	S	L	I	H	D	D	L	P	C	M	D	N	D	D	L	R	.	.	.	R	G	K	P	T	N	H	K	V	F	G	E	A	I	A	V	L	A	G	D	A	L	L	N	E	A	M	K	I	L
Template Known Secondary structure											T	T		S		G	G	G	G																			T	S	T	T	T	T			S			.	.	.	T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation												.																																																													.
Template Sequence		V	D	Y	S	L	E	E	G	K	S	.	A	L	K	A	T	K	I	I	A	D	A	A	G	S	D	G	M	I	G	G	Q	I	V	D	I	I	N	E	D	S	L	K	E	L	D	Y	M	H	L	K	K	T	G	E	L	I	K	A	S	I	M	S	G	A	V	L	A	E	A	S	.	E	G	D	I	K	K	L	E
Template Known Secondary structure												.													S	T	T	T											T	T														T															T	T			.
Template Predicted Secondary structure												.																																																													.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	D	D	V	K	I	G	I	K	S	T	A	I	L	F	G	Q	Y	D	K	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		G	F	G	Y	K	L	G	L	A	F	Q	I	K	D	D	I	L	D	V	V	N	.	.	.	.	.	.	.	N	Y	I	T	I	F	G	L	E	E	C	K
Template Known Secondary structure																							.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.								.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions